Whole Transcriptome Analysis Provides Insights into Molecular Mechanisms for Molting in Litopenaeus vannamei
文献类型：期刊论文
| 作者 | Gao, Yi1; Zhang, Xiaojun1; Wei, Jiankai1,2 ; Sun, Xiaoqing1,2; Yuan, Jianbo1; Li, Fuhua1; Xiang, Jianhai1
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| 刊名 | PLOS ONE
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| 出版日期 | 2015-12-09 |
| 卷号 | 10期号:12页码:0144350 |
| 英文摘要 | Molting is one of the most important biological processes in shrimp growth and development. All shrimp undergo cyclic molting periodically to shed and replace their exoskeletons. This process is essential for growth, metamorphosis, and reproduction in shrimp. However, the molecular mechanisms underlying shrimp molting remain poorly understood. In this study, we investigated global expression changes in the transcriptomes of the Pacific white shrimp, Litopenaeus vannamei, the most commonly cultured shrimp species worldwide. The transcriptome of whole L. vannamei was investigated by RNA-sequencing (RNA-seq) throughout the molting cycle, including the inter-molt (C), pre-molt (D0, D1, D2, D3, D4), and post-molt (P1 and P2) stages, and 93,756 unigenes were identified. Among these genes, we identified 5,117 genes differentially expressed (log(2)ratio >= 1 and FDR <= 0.001) in adjacent molt stages. The results were compared against the National Center for Biotechnology Information (NCBI) non-redundant protein/nucleotide sequence database, SwissProt, PFAM database, the Gene Ontology database, and the Kyoto Encyclopedia of Genes and Genomes database in order to annotate gene descriptions, associate them with gene ontology terms, and assign them to pathways. The expression patterns for genes involved in several molecular events critical for molting, such as hormone regulation, triggering events, implementation phases, skelemin, immune responses were characterized and considered as mechanisms underlying molting in L. vannamei. Comparisons with transcriptomic analyses in other arthropods were also performed. The characterization of major transcriptional changes in genes involved in the molting cycle provides candidates for future investigation of the molecular mechanisms. The data generated in this study will serve as an important transcriptomic resource for the shrimp research community to facilitate gene and genome annotation and to characterize key molecular processes underlying shrimp development. |
| 收录类别 | SCI |
| 语种 | 英语 |
| WOS记录号 | WOS:000366903300044 |
| 源URL | [http://ir.qdio.ac.cn/handle/337002/86644]  |
| 专题 | 海洋研究所_实验海洋生物学重点实验室 |
| 作者单位 | 1.Chinese Acad Sci, Inst Oceanol, Key Lab Expt Marine Biol, Qingdao, Peoples R China 2.Univ Chinese Acad Sci, Beijing, Peoples R China |
| 推荐引用方式 GB/T 7714 | Gao, Yi,Zhang, Xiaojun,Wei, Jiankai,et al. Whole Transcriptome Analysis Provides Insights into Molecular Mechanisms for Molting in Litopenaeus vannamei[J]. PLOS ONE,2015,10(12):0144350. |
| APA | Gao, Yi.,Zhang, Xiaojun.,Wei, Jiankai.,Sun, Xiaoqing.,Yuan, Jianbo.,...&Xiang, Jianhai.(2015).Whole Transcriptome Analysis Provides Insights into Molecular Mechanisms for Molting in Litopenaeus vannamei.PLOS ONE,10(12),0144350. |
| MLA | Gao, Yi,et al."Whole Transcriptome Analysis Provides Insights into Molecular Mechanisms for Molting in Litopenaeus vannamei".PLOS ONE 10.12(2015):0144350. |
入库方式： OAI收割
来源：海洋研究所
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