Inhibitory Impact of 3 '-Terminal 2 '-0-Methylated Small Silencing RNA on Target-Primed Polymerization and Unbiased Amplified Quantification of the RNA in Arabidopsis thaliana
文献类型：期刊论文
| 作者 | Chen, F; Fan, CH; Zhao, YX |
| 刊名 | ANALYTICAL CHEMISTRY
 |
| 出版日期 | 2015 |
| 卷号 | 87期号:17页码:8758—8764 |
| 关键词 | ISOTHERMAL AMPLIFICATION SENSITIVE DETECTION ULTRASENSITIVE DETECTION 3-WAY JUNCTION MICRORNA DNA METHYLATION NANOPARTICLES HYBRIDIZATION BIOGENESIS |
| ISSN号 | 0003-2700 |
| 通讯作者 | Zhao, YX (reprint author), Xi An Jiao Tong Univ, Educ Minist, Sch Life Sci & Technol, Key Lab Biomed Informat Engn, Xianning West Rd, Xian 710049, Shaanxi, Peoples R China. |
| 英文摘要 | 3'-terminal 2'-O-methylation has been found in several kinds of small silencing RNA, regarded as a protective mechanism against enzymatic 3' -> 5' degradation and 3'-end uridylation. The influence of this modification on enzymatic polymerization, however, remains unknown. Herein, a systematic investigation is performed to explore this issue. We found these methylated small RNAs exhibited a suppression behavior in target-primed polymerization, revealing biased result for the manipulation of these small RNAs by conventional polymerization-based methodology. The related potential mechanism is investigated and discussed, which is probably ascribed to the big size of modified group and its close location to 3'-OH. Furthermore, two novel solutions each utilizing base-stacking hybridization and three-way junction structure have been proposed to realize unbiased recognition of small RNAs. On the basis of phosphorothioate against nicking, a creative amplified strategy, phosphorothioate-protected polymerization/binicking amplification, has also been developed for the unbiased quantification of methylated small RNA in Arabidopsis thaliana, demonstrating its promising potential for real sample analysis. Collectively, our studies uncover the polymerization inhibition by 3'-terminal 2'-O-methylated small RNAs with mechanistic discussion, and propose novel unbiased solutions for amplified quantification of small RNAs in real sample. |
| 语种 | 英语 |
| WOS记录号 | WOS:000360773100025 |
| 公开日期 | 2016-03-08 |
| 源URL | [http://ir.sinap.ac.cn/handle/331007/24963]  |
| 专题 | 上海应用物理研究所_中科院上海应用物理研究所2011-2017年 |
| 推荐引用方式 GB/T 7714 | Chen, F,Fan, CH,Zhao, YX. Inhibitory Impact of 3 '-Terminal 2 '-0-Methylated Small Silencing RNA on Target-Primed Polymerization and Unbiased Amplified Quantification of the RNA in Arabidopsis thaliana[J]. ANALYTICAL CHEMISTRY,2015,87(17):8758—8764. |
| APA | Chen, F,Fan, CH,&Zhao, YX.(2015).Inhibitory Impact of 3 '-Terminal 2 '-0-Methylated Small Silencing RNA on Target-Primed Polymerization and Unbiased Amplified Quantification of the RNA in Arabidopsis thaliana.ANALYTICAL CHEMISTRY,87(17),8758—8764. |
| MLA | Chen, F,et al."Inhibitory Impact of 3 '-Terminal 2 '-0-Methylated Small Silencing RNA on Target-Primed Polymerization and Unbiased Amplified Quantification of the RNA in Arabidopsis thaliana".ANALYTICAL CHEMISTRY 87.17(2015):8758—8764. |
入库方式： OAI收割
来源：上海应用物理研究所
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