The genome of Syntrophorhabdus aromaticivorans strain UI provides new insights for syntrophic aromatic compound metabolism and electron flow
文献类型：期刊论文
| 作者 | Nobu, Masaru K.1; Narihiro, Takashi1,2; Tamaki, Hideyuki1,2; Qiu, Yan-Ling4; Sekiguchi, Yuji3; Woyke, Tanja5; Goodwin, Lynne6; Davenport, Karen W.6; Kamagata, Yoichi2,7; Liu, Wen-Tso1 |
| 刊名 | ENVIRONMENTAL MICROBIOLOGY
 |
| 出版日期 | 2015-12-01 |
| 卷号 | 17期号:12页码:4861-4872 |
| 英文摘要 | How aromatic compounds are degraded in various anaerobic ecosystems (e.g. groundwater, sediments, soils and wastewater) is currently poorly understood. Under methanogenic conditions (i.e. groundwater and wastewater treatment), syntrophic metabolizers are known to play an important role. This study explored the draft genome of Syntrophorhabdus aromaticivorans strain UI and identified the first syntrophic phenol-degrading phenylphosphate synthase (PpsAB) and phenylphosphate carboxylase (PpcABCD) and syntrophic terephthalate-degrading decarboxylase complexes. The strain UI genome also encodes benzoate degradation through hydration of the dienoyl-coenzyme A intermediate as observed in Geobacter metallireducens and Syntrophus aciditrophicus. Strain UI possesses electron transfer flavoproteins, hydrogenases and formate dehydrogenases essential for syntrophic metabolism. However, the biochemical mechanisms for electron transport between these H-2/formate-generating proteins and syntrophic substrate degradation remain unknown for many syntrophic metabolizers, including strain UI. Analysis of the strain UI genome revealed that heterodisulfide reductases (HdrABC), which are poorly understood electron transfer genes, may contribute to syntrophic H-2 and formate generation. The genome analysis further identified a putative ion-translocating ferredoxin : NADH oxidoreductase (IfoAB) that may interact with HdrABC and dissimilatory sulfite reductase gamma subunit (DsrC) to perform novel electron transfer mechanisms associated with syntrophic metabolism. |
| WOS标题词 | Science & Technology ; Life Sciences & Biomedicine |
| 类目[WOS] | Microbiology |
| 研究领域[WOS] | Microbiology |
| 关键词[WOS] | ANAEROBIC BENZOATE DEGRADATION ; BACTERIUM THAUERA-AROMATICA ; DEGRADES FATTY-ACIDS ; IRON-SULFUR PROTEINS ; CLOSTRIDIUM-HYDROXYBENZOICUM ; GEOBACTER-METALLIREDUCENS ; RHODOBACTER-CAPSULATUS ; METHANOGENIC CONSORTIA ; DESULFOVIBRIO-VULGARIS ; ENERGY-CONSERVATION |
| 收录类别 | SCI |
| 语种 | 英语 |
| WOS记录号 | WOS:000368457800005 |
| 公开日期 | 2016-03-15 |
| 源URL | [http://ir.qibebt.ac.cn/handle/337004/7924]  |
| 专题 | 青岛生物能源与过程研究所_生物制氢与沼气团队 |
| 作者单位 | 1.Univ Illinois, Dept Civil & Environm Engn, Urbana, IL USA 2.Natl Inst Adv Ind Sci & Technol, Bioprod Res Inst, Tsukuba, Ibaraki, Japan 3.Natl Inst Adv Ind Sci & Technol, Biomed Res Inst, Tsukuba, Ibaraki, Japan 4.Chinese Acad Sci, Qingdao Inst Bioenergy & Bioproc Technol, Key Lab Biofuels, Qingdao, Shandong, Peoples R China 5.DOE Joint Genome Inst, Walnut Creek, CA USA 6.Los Alamos Natl Lab, Los Alamos, NM USA 7.Natl Inst of Adv Ind Sci & Technol AIST, Bioprod Res Inst, Toyohira Ku, Sapporo, Hokkaido, Japan |
| 推荐引用方式 GB/T 7714 | Nobu, Masaru K.,Narihiro, Takashi,Tamaki, Hideyuki,et al. The genome of Syntrophorhabdus aromaticivorans strain UI provides new insights for syntrophic aromatic compound metabolism and electron flow[J]. ENVIRONMENTAL MICROBIOLOGY,2015,17(12):4861-4872. |
| APA | Nobu, Masaru K..,Narihiro, Takashi.,Tamaki, Hideyuki.,Qiu, Yan-Ling.,Sekiguchi, Yuji.,...&Liu, Wen-Tso.(2015).The genome of Syntrophorhabdus aromaticivorans strain UI provides new insights for syntrophic aromatic compound metabolism and electron flow.ENVIRONMENTAL MICROBIOLOGY,17(12),4861-4872. |
| MLA | Nobu, Masaru K.,et al."The genome of Syntrophorhabdus aromaticivorans strain UI provides new insights for syntrophic aromatic compound metabolism and electron flow".ENVIRONMENTAL MICROBIOLOGY 17.12(2015):4861-4872. |
入库方式： OAI收割
来源：青岛生物能源与过程研究所
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