Chloroplast genome of Sargassum horneri (Sargassaceae, Phaeophyceae): comparative chloroplast genomics of brown algae
文献类型：期刊论文
| 作者 | Liu, Feng1,2; Pang, Shaojun1 |
| 刊名 | JOURNAL OF APPLIED PHYCOLOGY
 |
| 出版日期 | 2016-04-01 |
| 卷号 | 28期号:2页码:1419-1426 |
| 关键词 | Sargassum horneri Chloroplast genome Brown alga Phaeophyceae Sargassaceae |
| 英文摘要 | Sargassum horneri (Turner) C. Agardh is an important canopy-forming seaweed native to the northwestern Pacific coast growing in the upper sublittoral zone. In this study, the chloroplast genome of S. horneri was fully sequenced and compared with three other brown algal chloroplast genomes. The S. horneri chloroplast genome is 124,068 bp in size with an inverted repeat of 5436 bp and is slightly smaller than the other three brown algal chloroplast DNAs (cpDNAs). It contains 173 genes, including 6 ribosomal RNA (rRNA) genes, 28 transfer RNA (tRNA) genes, and 139 protein-coding genes (PCGs). The coding sequence constitutes 86.32 % of the S. horneri cpDNA. The total spacer size was found to be reduced to 16,967 bp with an average length of 101.0 bp, which makes the S. horneri cpDNA more compact than the other three brown algal cpDNAs. Sixteen small inverted and nine tandem repeats were detected in S. horneri chloroplast genomes. Two introns in trnL2 and trnW genes were identified with the size of 209 and 90 bp, respectively. Its gene content and order are identical to those of Fucus vesiculosus cpDNA, indicating that the chloroplast genome organization at the level of the order Fucales is highly conserved. |
| 收录类别 | SCI |
| 语种 | 英语 |
| WOS记录号 | WOS:000372256900070 |
| 源URL | [http://ir.qdio.ac.cn/handle/337002/126219]  |
| 专题 | 海洋研究所_实验海洋生物学重点实验室 |
| 作者单位 | 1.Chinese Acad Sci, Inst Oceanol, Key Lab Expt Marine Biol, Qingdao 266071, Peoples R China 2.Huaihai Inst Technol, Key Lab Marine Biotechnol Jiangsu Prov, Lianyungang 222005, Peoples R China |
| 推荐引用方式 GB/T 7714 | Liu, Feng,Pang, Shaojun. Chloroplast genome of Sargassum horneri (Sargassaceae, Phaeophyceae): comparative chloroplast genomics of brown algae[J]. JOURNAL OF APPLIED PHYCOLOGY,2016,28(2):1419-1426. |
| APA | Liu, Feng,&Pang, Shaojun.(2016).Chloroplast genome of Sargassum horneri (Sargassaceae, Phaeophyceae): comparative chloroplast genomics of brown algae.JOURNAL OF APPLIED PHYCOLOGY,28(2),1419-1426. |
| MLA | Liu, Feng,et al."Chloroplast genome of Sargassum horneri (Sargassaceae, Phaeophyceae): comparative chloroplast genomics of brown algae".JOURNAL OF APPLIED PHYCOLOGY 28.2(2016):1419-1426. |
入库方式： OAI收割
来源：海洋研究所
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