Complete genome sequence of Salinicoccus halodurans H3B36, isolated from the Qaidam Basin in China
文献类型：期刊论文
| 作者 | Jiang, Kai1,2,3; Xue, Yanfen1,2; Ma, Yanhe1,2 |
| 刊名 | STANDARDS IN GENOMIC SCIENCES
 |
| 出版日期 | 2015-12-01 |
| 卷号 | 10 |
| 关键词 | Qaidam Basin Moderately halophilic Salinicoccus halodurans strain Staphylococcaceae Genome sequencing |
| 英文摘要 | Salinicoccus halodurans H3B36 is a moderately halophilic bacterium isolated from a sediment sample of Qaidam Basin at 3.2 m vertical depth. Strain H3B36 accumulate N-alpha-acetyl-alpha-lysine as compatible solute against salinity and heat stresses and may have potential applications in industrial biotechnology. In this study, we sequenced the genome of strain H3B36 using single molecule, real-time sequencing technology on a PacBio RS II instrument. The complete genome of strain H3B36 was 2,778,379 bp and contained 2,853 protein-coding genes, 12 rRNA genes, and 61 tRNA genes with 58 tandem repeats, six minisatellite DNA sequences, 11 genome islands, and no CRISPR repeat region. Further analysis of epigenetic modifications revealed the presence of 11,000 m4C-type modified bases, 7,545 m6A-type modified bases, and 89,064 other modified bases. The data on the genome of this strain may provide an insight into the metabolism of N-alpha-acetyl-alpha-lysine. |
| WOS标题词 | Science & Technology ; Life Sciences & Biomedicine |
| 类目[WOS] | Genetics & Heredity ; Microbiology |
| 研究领域[WOS] | Genetics & Heredity ; Microbiology |
| 关键词[WOS] | SINGLE-MOLECULE ; HALOPHILIC MICROORGANISMS ; SALINIBACTER-RUBER ; DNA-SEQUENCES ; SP-NOV. ; BACTERIA ; DATABASE ; VISUALIZATION ; EVOLUTION ; ALIGNMENT |
| 收录类别 | SCI |
| 语种 | 英语 |
| WOS记录号 | WOS:000368006000002 |
| 源URL | [http://124.16.173.210/handle/834782/1548]  |
| 专题 | 天津工业生物技术研究所_酶工程实验室 马延和 _期刊论文 |
| 作者单位 | 1.Chinese Acad Sci, Inst Microbiol, State Key Lab Microbial Resources, Beijing, Peoples R China 2.Chinese Acad Sci, Inst Microbiol, Natl Engn Lab Ind Enzymes, Beijing, Peoples R China 3.Univ Chinese Acad Sci, Beijing, Peoples R China |
| 推荐引用方式 GB/T 7714 | Jiang, Kai,Xue, Yanfen,Ma, Yanhe. Complete genome sequence of Salinicoccus halodurans H3B36, isolated from the Qaidam Basin in China[J]. STANDARDS IN GENOMIC SCIENCES,2015,10. |
| APA | Jiang, Kai,Xue, Yanfen,&Ma, Yanhe.(2015).Complete genome sequence of Salinicoccus halodurans H3B36, isolated from the Qaidam Basin in China.STANDARDS IN GENOMIC SCIENCES,10. |
| MLA | Jiang, Kai,et al."Complete genome sequence of Salinicoccus halodurans H3B36, isolated from the Qaidam Basin in China".STANDARDS IN GENOMIC SCIENCES 10(2015). |
入库方式： OAI收割
来源：天津工业生物技术研究所
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