Development of SNP markers in lined seahorse (Hippocampus erectus) based on transcriptome sequencing
文献类型：期刊论文
| 作者 | Qu, Hongyue; Luo, Wei; Lin, Qiang |
| 刊名 | CONSERVATION GENETICS RESOURCES
 |
| 出版日期 | 2016 |
| 卷号 | 8期号:1页码:2016-01-04 |
| 关键词 | Hippocampus erectus SNP Transcriptome Genetic diversity |
| 通讯作者 | Lin, Q (reprint author), Chinese Acad Sci, South China Sea Inst Oceanol, Key Lab Trop Marine Bioresources & Ecol, Guangzhou 510301, Guangdong, Peoples R China. |
| 中文摘要 | The population of lined seahorse (Hippocampus erectus) rapidly reduced because of the heavy exploitation in the wild. The single nucleotide polymorphism (SNP), known as one of the popular third-generation molecular markers can be developed easier and faster from high-throughput transcriptome sequencing. In this study, we developed 46 novel SNP markers based on transcriptome of H. erectus. Genetic diversity analysis showed that observed heterozygosity (Ho) and expected heterozygosity (He) were varied from 0.1724 to 0.5250 and from 0.1588 to 0.5000, respectively, and the minor allele frequency value was from 0.0625 to 0.5000. Seven loci were significantly different from Hardy-Weinberg equilibrium (P < 0.05) and significant linkage disequilibrium occurred between HeSNP24 and HeSNP38 (P < 0.01). The present study can provide an effective tool for population study and genetic breeding. |
| 学科主题 | Biodiversity & Conservation; Genetics & Heredity |
| 源URL | [http://ir.scsio.ac.cn/handle/344004/15482]  |
| 专题 | 南海海洋研究所_中科院海洋生物资源可持续利用重点实验室 |
| 推荐引用方式 GB/T 7714 | Qu, Hongyue,Luo, Wei,Lin, Qiang. Development of SNP markers in lined seahorse (Hippocampus erectus) based on transcriptome sequencing[J]. CONSERVATION GENETICS RESOURCES,2016,8(1):2016-01-04. |
| APA | Qu, Hongyue,Luo, Wei,&Lin, Qiang.(2016).Development of SNP markers in lined seahorse (Hippocampus erectus) based on transcriptome sequencing.CONSERVATION GENETICS RESOURCES,8(1),2016-01-04. |
| MLA | Qu, Hongyue,et al."Development of SNP markers in lined seahorse (Hippocampus erectus) based on transcriptome sequencing".CONSERVATION GENETICS RESOURCES 8.1(2016):2016-01-04. |
入库方式： OAI收割
来源：南海海洋研究所
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