Phylogenetic relationships of 12 Penaeoidea shrimp species deduced from mitochondrial DNA sequences
文献类型：期刊论文
| 作者 | Quan JX1,2,3,4; Zhuang ZM5; Deng JY5; Dai JX3; Zhang YP[*]1,2 |
| 刊名 | BIOCHEMICAL GENETICS
 |
| 出版日期 | 2004 |
| 卷号 | 42期号:9-10页码:331-345 |
| 关键词 | molecular phylogeny mtDNA COI gene 16s rRNA gene Penaeoidea |
| ISSN号 | 0006-2928 |
| 通讯作者 | zhangyp@public.km.yn.cn |
| 英文摘要 | DNA sequences of an 847 bp fragment of mitochondrial cytochrome oxidase subunit I (COI) gene and a 514 bp fragment of 16s rRNA gene were determined to examine the phylogenetic relationships of 12 Penaeoidea shrimp species (Penaeus chinensis, Penaeus japonicus, Penaeus penicillatus, Penaeus vannamei, Penaeus canaliculatus, Trachypenaeus curvirostris, Metapenaeus affinis, Metapenaeus ensis, Metapenaeopsis barbata, Parapenaeus fissuroides, Parapenaeopsis hardiwickii, Solenocera crassicomis). Both fragments of the swimming crab Portunus trituberculaus chosen as the outgroup were also sequenced. Intraspecific sequence divergence of 0.24-1.2% in the COI gene was found in 5 species, while no intraspecific variation was observed in the 16s rRNA gene. Three phylogenetic trees based on the 1361 bp combined sequences of COI and 16s rRNA were concordant in indicating the following suggestions: (1) phylogenetic relationship of the 11 Penaeidae species based on our result support the opinion of Burkenroad (Burkenroad, M.D. (1983). Crustacean Issues 3:279-290) on the basis of morphological features; (2) it seems more reasonable to class Solenocera crassicorni in the family Penaeidae; (3) the fragment of the COI gene chosen here appears to be a good marker for speciation studies and population analysis in Crustaceans, while the 16s rRNA gene fragment here seems suitable for examining phylogenetic relationships at the species or genus levels in Crustaceans. Our time estimates suggest that Penaeus and Metapenaeus might have separated about 6.38 x 10(6)-7.98 x 10(6) years BP in the post-Miocene, and the species separation within Metapenaeus and Penaeus might occur 0.08 x 10(6)-0.4 x 10(6) years BP in the late Pleistocene. |
| 收录类别 | SCI |
| 资助信息 | This work was supported by the National Natural Science Foundation of China and the Chinese Academy of Sciences. We thank Dr. Xilong Li, and Dr. Jianlin Han for their kind help. Thanks go to Prof. Yongquan Su, and Mr. Junzhuo Xu for generously supplying species samples. |
| 原文出处 | 20044331.pdf |
| 语种 | 英语 |
| 公开日期 | 2010-08-24 |
| 源URL | [http://159.226.149.42:8088/handle/152453/4125]  |
| 专题 | 昆明动物研究所_分子进化基因组学 |
| 作者单位 | 1.Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, 650223 Yunnan, People’s Republic of China 2.Laboratory for Conservation and Utilization of Bio-resource, Yunnan University, People’s Republic of China 3.Marine Life Science College, Ocean University of Qingdao, Qingdao, Shandong, People’s Republic of China 4.Present address: Institute of Molecular and Cell Biology, National Institute of Advanced Industrial Science and Technology, Tsukuba 305-8566, Japan 5.Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Science, Qingdao, Shandong, People’s Republic of China |
| 推荐引用方式 GB/T 7714 | Quan JX,Zhuang ZM,Deng JY,et al. Phylogenetic relationships of 12 Penaeoidea shrimp species deduced from mitochondrial DNA sequences[J]. BIOCHEMICAL GENETICS,2004,42(9-10):331-345. |
| APA | Quan JX,Zhuang ZM,Deng JY,Dai JX,&Zhang YP[*].(2004).Phylogenetic relationships of 12 Penaeoidea shrimp species deduced from mitochondrial DNA sequences.BIOCHEMICAL GENETICS,42(9-10),331-345. |
| MLA | Quan JX,et al."Phylogenetic relationships of 12 Penaeoidea shrimp species deduced from mitochondrial DNA sequences".BIOCHEMICAL GENETICS 42.9-10(2004):331-345. |
入库方式： OAI收割
来源：昆明动物研究所
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