Phylogenetic analyses of Fringillidae (Aves : Passeriformes) using mitochondrial tRNA gene sequences and secondary structure
文献类型：期刊论文
| 作者 | Cui B1; Ma F[*]1; Wang X1; Sun Y1; Yu L2; Li-Ling J3; Li QW[*]1 |
| 刊名 | JOURNAL OF BIOLOGICAL SYSTEMS
 |
| 出版日期 | 2006 |
| 卷号 | 14期号:3页码:413-424 |
| 关键词 | Fringillidae mitochondria tRNA cluster secondary structure phylogenetic analysis |
| ISSN号 | 0218-3390 |
| 通讯作者 | mafei01@tsinghua.org.cn ; liqw@263.net |
| 合作状况 | 其它 |
| 英文摘要 | Fringillidae is a large and diverse family of Passeriformes. So far, however, Fringillidae relationships deduced from morphological features and by a number of molecular approaches have remained unproven. Recently, much attention has been attracted to mitochondrial tRNA genes, whose sequence and secondary structural characteristics have shown to be useful for Acrodont Lizards and deep-branch phylogenetic studies. In order to identify useful phylogenetic markers and test Fringillidae relationships, we have sequenced three major clusters of mitochondrial tRNA genes from 15 Fringillidae, taxa. A coincident tree, with coturnix as outgroup, was obtained through Maximum-likelihood method using combined dataset of 11 mitochondrial tRNA gene sequences. The result was similar to that through Neighbor-joining but different from Maximum-parsimony methods. Phylogenetic trees constructed with stem-region sequences of 11 genes had many different topologies and lower confidence than with total sequences. On the other hand, some secondary structural characteristics may provide phylogenetic information on relatively short internal branches at under-genus level. In summary, our data indicate that mitochondrial tRNA genes can achieve high confidence on Fringillidae phylogeny at subfamily level, and stem-region sequences may be suitable only at above-family level. Secondary structural characteristics may also be useful to resolve phylogenetic relationship between different genera of Fringillidae with good performance. |
| 收录类别 | 其他 |
| 资助信息 | This study has been supported by the National Science Foundation of China (No. 30170505). |
| 原文出处 | 200614413.pdf |
| 语种 | 英语 |
| 公开日期 | 2010-08-24 |
| 源URL | [http://159.226.149.42:8088/handle/152453/4221]  |
| 专题 | 昆明动物研究所_其他 |
| 作者单位 | 1.Laboratory of Comparative Genome and Bioinformatics College of Life Sciences, Liaoning Normal University Dalian 116029, P. R. China 2.Kunming Institute of Zoology, Chinese Academy of Sciences Kunming 650223, P. R. China 3.Department of Medical Genetics, China Medical University Shenyang 110001, P. R. China |
| 推荐引用方式 GB/T 7714 | Cui B,Ma F[*],Wang X,et al. Phylogenetic analyses of Fringillidae (Aves : Passeriformes) using mitochondrial tRNA gene sequences and secondary structure[J]. JOURNAL OF BIOLOGICAL SYSTEMS,2006,14(3):413-424. |
| APA | Cui B.,Ma F[*].,Wang X.,Sun Y.,Yu L.,...&Li QW[*].(2006).Phylogenetic analyses of Fringillidae (Aves : Passeriformes) using mitochondrial tRNA gene sequences and secondary structure.JOURNAL OF BIOLOGICAL SYSTEMS,14(3),413-424. |
| MLA | Cui B,et al."Phylogenetic analyses of Fringillidae (Aves : Passeriformes) using mitochondrial tRNA gene sequences and secondary structure".JOURNAL OF BIOLOGICAL SYSTEMS 14.3(2006):413-424. |
入库方式： OAI收割
来源：昆明动物研究所
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