The Updated Phylogenies of the Phasianidae Based on Combined Data of Nuclear and Mitochondrial DNA
文献类型：期刊论文
| 作者 | Shen YY[*]1,2; Dai K3; Cao X1,6; Murphy RW1,4; Shen XJ2,3; Zhang YP[*]1,5 |
| 刊名 | PLOS ONE
 |
| 出版日期 | 2014 |
| 卷号 | 9期号:4页码:e95786 |
| 通讯作者 | shenyy@mail.kiz.ac.cn ; zhangyp@mail.kiz.ac.cn |
| 英文摘要 | The phylogenetic relationships of species in the Phasianidae, Order Galliformes, are the object of intensive study. However, convergent morphological evolution and rapid species radiation result in much ambiguity in the group. Further, matrilineal (mtDNA) genealogies conflict with trees based on nuclear DNA retrotransposable elements. Herein, we analyze 39 nearly complete mitochondrial genomes (three new) and up to seven nuclear DNA segments. We combine these multiple unlinked, more informative genetic markers to infer historical relationships of the major groups of phasianids. The nuclear DNA tree is largely congruent with the tree derived from mt genomes. However, branching orders of mt/nuclear trees largely conflict with those based on retrotransposons. For example, Gallus/Bambusicola/Francolinus forms the sister-group of Coturnix/Alectoris in the nuclear/mtDNA trees, yet the tree based on retrotransposable elements roots the former at the base of the tree and not with the latter. Further, while peafowls cluster with Gallus/Coturnix in the mt tree, they root at the base of the phasianids following Gallus in the tree based on retrotransposable elements. The conflicting branch orders in nuclear/mtDNA and retrotransposons-based trees in our study reveal the complex topology of the Phasianidae. |
| 收录类别 | SCI |
| 资助信息 | This work was supported by National Natural Science Foundation of China (30621092). R. W. Murphy was supported by a Visiting Professorship for Senior International Scientists from the Chinese Academy of Sciences and manuscript preparation was supported by a Natural Sciences and Engineering Research Council of Canada Discovery Grant A3148 |
| 语种 | 英语 |
| WOS记录号 | WOS:000335226500144 |
| 公开日期 | 2014-06-03 |
| 源URL | [http://159.226.149.42:8088/handle/152453/7853]  |
| 专题 | 昆明动物研究所_分子进化基因组学 昆明动物研究所_遗传资源与进化国家重点实验室 |
| 作者单位 | 1.State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, the Chinese Academy of Sciences, Kunming, China 2.Joint Influenza Research Centre (SUMC/HKU), Shantou University Medical College, Shantou, China 3.Xinjiang Institute of Ecology and Geography, the Chinese Academy of Sciences, Urumqi, China 4.Department of Natural History, Royal Ontario Museum, Toronto, Canada 5.Laboratory for Conservation and Utilization of Bio-resources, Yunnan University, Kunming, China 6.University of the Chinese Academy of Sciences, Beijing, China |
| 推荐引用方式 GB/T 7714 | Shen YY[*],Dai K,Cao X,et al. The Updated Phylogenies of the Phasianidae Based on Combined Data of Nuclear and Mitochondrial DNA[J]. PLOS ONE,2014,9(4):e95786. |
| APA | Shen YY[*],Dai K,Cao X,Murphy RW,Shen XJ,&Zhang YP[*].(2014).The Updated Phylogenies of the Phasianidae Based on Combined Data of Nuclear and Mitochondrial DNA.PLOS ONE,9(4),e95786. |
| MLA | Shen YY[*],et al."The Updated Phylogenies of the Phasianidae Based on Combined Data of Nuclear and Mitochondrial DNA".PLOS ONE 9.4(2014):e95786. |
入库方式： OAI收割
来源：昆明动物研究所
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