热门
DoGSD: the dog and wolf genome SNP database
文献类型：期刊论文
| 作者 | Bai B1,2,4; Zhao WM3; Tang BX3,5; Wang YQ3; Wang L1; Zhang Z5; Yang HC3,4,6; Liu YH1; Zhu JW3; Irwin DM2,7 |
| 刊名 | NUCLEIC ACIDS RESEARCH
 |
| 出版日期 | 2015 |
| 卷号 | 43期号:Database issue页码:D777-D783 |
| 通讯作者 | wanggd@mail.kiz.ac.cn ; zhangyp@@mail.kiz.ac.cn |
| 合作状况 | 其它 |
| 英文摘要 | The rapid advancement of next-generation sequencing technology has generated a deluge of genomic data from domesticated dogs and their wild ancestor, grey wolves, which have simultaneously broadened our understanding of domestication and diseases that are shared by humans and dogs. To address the scarcity of single nucleotide polymorphism (SNP) data provided by authorized databases and to make SNP data more easily/friendly usable and available, we propose DoGSD (http://dogsd.big.ac.cn), the first canidae-specific database which focuses on whole genome SNP data from domesticated dogs and grey wolves. The DoGSD is a web-based, open-access resource comprising similar to 19 million high-quality whole-genome SNPs. In addition to the dbSNP data set (build 139), DoGSD incorporates a comprehensive collection of SNPs from two newly sequenced samples (1 wolf and 1 dog) and collected SNPs from three latest dog/wolf genetic studies (7 wolves and 68 dogs), which were taken together for analysis with the population genetic statistics, Fst. In addition, DoGSD integrates some closely related information including SNP annotation, summary lists of SNPs located in genes, synonymous and non-synonymous SNPs, sampling location and breed information. All these features make DoGSD a useful resource for in-depth analysis in dog-/wolf-related studies. |
| 资助信息 | 973 program [2013CB835200 and 2013CB835202 to G.D.W.]; The Strategic Priority Research Program of the Chinese Academy of Sciences,Grant No.XDB13040500; Chinese Academy of Sciences [1731200000001 to W.Z.]; The Youth Innovation Promotion Association, Chinese Academy of Sciences [to G.D.W.]. Funding for open access charge: 973 program. |
| 收录类别 | SCI |
| 语种 | 英语 |
| WOS记录号 | WOS:000350210400113 |
| 公开日期 | 2015-04-10 |
| 源URL | [http://159.226.149.42:8088/handle/152453/8292]  |
| 专题 | 昆明动物研究所_分子进化基因组学 昆明动物研究所_遗传资源与进化国家重点实验室 |
| 作者单位 | 1.Laboratory for Conservation and Utilization of Bioresource & Key Laboratory for Microbial Resources of the Ministry of Education, Yunnan University, Kunming 650091, China 2.State Key Laboratory of Genetic Resources and Evolution, and Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China 3.Core Genomic Facility, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China 4.Kunming College of Life Science, University of Chinese Academy of Sciences,Kunming 650204, China 5.CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China 6.Department of Molecular and Cell Biology, School of Life Sciences, University of Science and Technology of China, Hefei 230026, China 7.Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, Canada |
| 推荐引用方式 GB/T 7714 | Bai B,Zhao WM,Tang BX,et al. DoGSD: the dog and wolf genome SNP database[J]. NUCLEIC ACIDS RESEARCH,2015,43(Database issue):D777-D783. |
| APA | Bai B.,Zhao WM.,Tang BX.,Wang YQ.,Wang L.,...&Zhang YP[*].(2015).DoGSD: the dog and wolf genome SNP database.NUCLEIC ACIDS RESEARCH,43(Database issue),D777-D783. |
| MLA | Bai B,et al."DoGSD: the dog and wolf genome SNP database".NUCLEIC ACIDS RESEARCH 43.Database issue(2015):D777-D783. |
入库方式： OAI收割
来源：昆明动物研究所
浏览0
下载0
收藏0
其他版本
除非特别说明，本系统中所有内容都受版权保护，并保留所有权利。