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Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes
文献类型：期刊论文
| 作者 | Xu X1,2,3; Liu X2; Ge S4; Jensen JD5; Hu FY6; Li X1; Dong Y1; Gutenkunst RN7; Wang J[*]2,9; Wang W[*]1 |
| 刊名 | NATURE BIOTECHNOLOGY
 |
| 出版日期 | 2012 |
| 卷号 | 30期号:1页码:105-U157 |
| 通讯作者 | wangj@genomics.org.cn ; rasmus_nielsen@berkeley.edu ; wangj@genomics.org.cn ; wwang@mail.kiz.ac.cn |
| 合作状况 | 其它 |
| 英文摘要 | Rice is a staple crop that has undergone substantial phenotypic and physiological changes during domestication. Here we resequenced the genomes of 40 cultivated accessions selected from the major groups of rice and 10 accessions of their wild progenitors (Oryza rufipogon and Oryza nivara) to >15 x raw data coverage. We investigated genome-wide variation patterns in rice and obtained 6.5 million high-quality single nucleotide polymorphisms (SNPs) after excluding sites with missing data in any accession. Using these population SNP data, we identified thousands of genes with significantly lower diversity in cultivated but not wild rice, which represent candidate regions selected during domestication. Some of these variants are associated with important biological features, whereas others have yet to be functionally characterized. The molecular markers we have identified should be valuable for breeding and for identifying agronomically important genes in rice |
| 收录类别 | SCI |
| 资助信息 | This work was supported by the Chinese 973 program (2007CB815700), the National Natural Science Foundation of China (30990242), the Provincial Key Grant of Yunnan Province (2008CC017; 2008GA002), the Shenzhen Municipal Government and the Yantian District local government of Shenzhen, the Ole Rømer grant from the Danish Natural Science Research Council, and a CAS-Max Planck Society Fellowship and the 100 talent program of CAS to W.W., J.W. and S.G. We also acknowledge funding support from the Chinese Ministry of Agriculture (948 program), the Shenzhen Municipal Government of China and grants from Shenzhen Bureau of Science Technology & Information, China (ZYC200903240077A; CXB200903110066A). |
| 语种 | 英语 |
| WOS记录号 | WOS:000299110600027 |
| 公开日期 | 2012-03-20 |
| 源URL | [http://159.226.149.42:8088/handle/353002/6897]  |
| 专题 | 昆明动物研究所_基因起源组 昆明动物研究所_遗传资源与进化国家重点实验室 |
| 作者单位 | 1.CAS-Max Planck Junior Research Group on Evolutionary Genomics, State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences (CAS), Kunming, China 2.BGI-Shenzhen, Shenzhen, China 3.Graduate University of Chinese Academy Sciences, Beijing, China 4.State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, China 5.5 School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland 6.Food Crops Research Institute, Yunnan Academy of Agricultural Sciences, Kunming, China 7.Department of Molecular and Cellular Biology, University of Arizona, Tucson, Arizona, USA 8.South China University of Technology, Guangdong, China 9.Department of Biology, University of Copenhagen, Copenhagen, Denmark 10.Department of Plant Breeding & Genetics, Cornell University, Ithaca, New York, USA |
| 推荐引用方式 GB/T 7714 | Xu X,Liu X,Ge S,et al. Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes[J]. NATURE BIOTECHNOLOGY,2012,30(1):105-U157. |
| APA | Xu X.,Liu X.,Ge S.,Jensen JD.,Hu FY.,...&Wang W[*].(2012).Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes.NATURE BIOTECHNOLOGY,30(1),105-U157. |
| MLA | Xu X,et al."Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes".NATURE BIOTECHNOLOGY 30.1(2012):105-U157. |
入库方式： OAI收割
来源：昆明动物研究所
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