Protein three-dimensional structural databases: Domains, structurally aligned homologues and superfamilies
文献类型：期刊论文
| 作者 | Sowdhamini R1,4; Burke DF1; Deane C1; Huang JF1,2; Mizuguchi K1; Nagarajaram HA1; Overington JP3; Srinivasan N1,5; Steward RE1; Blundell TL[*]1 |
| 刊名 | ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
 |
| 出版日期 | 1998 |
| 卷号 | 54期号:X页码:1168-1177 (子辑: 6 特刊: S1) |
| ISSN号 | 0907-4449 |
| 通讯作者 | tom@cryst.bioc.cam.ac.uk |
| 合作状况 | 其它 |
| 英文摘要 | This paper reports the availability of a database of protein structural domains (DDBASE), an alignment database of homologous proteins (HOMSTRAD) and a database of structurally aligned superfamilies (CAMPASS) on the World Wide Web (WWW). DDBASE contains information on the organization of structural domains and their boundaries; it includes only one representative domain from each of the homologous families. This database has been derived by identifying the presence of structural domains in proteins on the basis of inter-secondary structural distances using the program DIAL [Sowdhamini & Blundell (1995), Protein Sci. 4, 506-520]. The alignment of proteins in superfamilies has been performed on the basis of the structural features and relationships of individual residues using the program COMPARER [Sali & Blundell (1990), J. Mol. Biol. 212, 403-428]. The alignment databases contain information on the conserved structural features in homologous proteins and those belonging to superfamilies. Available data include the sequence alignments in structure-annotated formats and the provision for viewing superposed structures of proteins using a graphical interface. Such information, which is freely accessible on the WWW, should be of value to crystallographers in the comparison of newly determined protein structures with previously identified protein domains or existing families. |
| 收录类别 | SCI |
| 原文出处 | 1998541168.pdf |
| 语种 | 英语 |
| 公开日期 | 2010-08-24 |
| 源URL | [http://159.226.149.42:8088/handle/152453/4879]  |
| 专题 | 昆明动物研究所_结构生物信息学 |
| 作者单位 | 1.Department of Biochemistry, University of Cambridge, 80 Tennis Court Road, Cambridge CB2 1QW, England 2.Kunming Institute of Zoology, The Chinese Academy of Sciences, Eastern Jiaochang Road, Kunming, Yunnan 650223, Peoples Republic of China 3.Pfizer Central Research, Sandwich, Kent CT13 9NJ, England 4.Address from June 1998: National Centre for Biological Sciences, TIFR Centre, PO Box 1234, Indian Institute of Science Campus, Bangalore 560012, India 5.Address from June1998: MolecularBiophysics Unit,Indian Institute of Science, Bangalore 560012, India |
| 推荐引用方式 GB/T 7714 | Sowdhamini R,Burke DF,Deane C,et al. Protein three-dimensional structural databases: Domains, structurally aligned homologues and superfamilies[J]. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY,1998,54(X):1168-1177 (子辑: 6 特刊: S1). |
| APA | Sowdhamini R.,Burke DF.,Deane C.,Huang JF.,Mizuguchi K.,...&Blundell TL[*].(1998).Protein three-dimensional structural databases: Domains, structurally aligned homologues and superfamilies.ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY,54(X),1168-1177 (子辑: 6 特刊: S1). |
| MLA | Sowdhamini R,et al."Protein three-dimensional structural databases: Domains, structurally aligned homologues and superfamilies".ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY 54.X(1998):1168-1177 (子辑: 6 特刊: S1). |
入库方式： OAI收割
来源：昆明动物研究所
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