Comparative transcriptomic analyses of two bighead carp (Hypophthalmichthys nobilis) groups with different growth rates
文献类型：期刊论文
| 作者 | Fu, Beide1; Wang, Xinhua1,2; Feng, Xiu1,2; Yu, Xiaomu1; Tong, Jingou1 |
| 刊名 | COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS
 |
| 出版日期 | 2016-12-01 |
| 卷号 | 20页码:111-117 |
| 关键词 | Bighead carp Growth rate Comparative transcriptomics RT-PCR |
| ISSN号 | 1744-117X |
| 英文摘要 | Growth is one of the most important and desired economic traits for aquaculture species, and identification of loci controlling growth is a difficult task without genomic sequences. In this study, the liver transcriptomes of two groups (F and S) of bighead carp (Hypophthalmichthys nobilis) within a full-sib family with significant differences in growth rate were sequenced. Following de novo assembly of the combined reads from the two groups, a total of 410 differentially expressed genes were identified. Functional annotation and analysis of these genes indicated that some of these were involved in regulation of glucose levels and lipid metabolism, particularly fatty acid oxidation and transport. In addition to the differences on expression levels between the two groups, we also identified many non-synonymous coding single-nucleotide polymorphisms (SNPs) that were specific to each group, including SNPs from 4 genes involved in the lipid metabolism process (GO: 0006629). These differences in gene expression and DNA sequences may in part comprise the genetic background for the regulation of early growth rate in bighead carp. (C) 2016 Elsevier Inc. All rights reserved. |
| WOS标题词 | Science & Technology ; Life Sciences & Biomedicine |
| 类目[WOS] | Biochemistry & Molecular Biology ; Genetics & Heredity |
| 研究领域[WOS] | Biochemistry & Molecular Biology ; Genetics & Heredity |
| 关键词[WOS] | RNA-SEQ DATA ; ARISTICHTHYS-NOBILIS ; REFERENCE GENOME ; I SYSTEM ; MOLITRIX ; FISH ; HORMONE ; MARKERS ; CLONING ; SNPS |
| 收录类别 | SCI |
| 语种 | 英语 |
| WOS记录号 | WOS:000389097500013 |
| 源URL | [http://ir.ihb.ac.cn/handle/342005/28697]  |
| 专题 | 水生生物研究所_水环境工程研究中心_期刊论文 |
| 作者单位 | 1.Chinese Acad Sci, State Key Lab Freshwater Ecol & Biotechnol, Inst Hydrobiol, Wuhan 430072, Peoples R China 2.Univ Chinese Acad Sci, Beijing 100039, Peoples R China |
| 推荐引用方式 GB/T 7714 | Fu, Beide,Wang, Xinhua,Feng, Xiu,et al. Comparative transcriptomic analyses of two bighead carp (Hypophthalmichthys nobilis) groups with different growth rates[J]. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS,2016,20:111-117. |
| APA | Fu, Beide,Wang, Xinhua,Feng, Xiu,Yu, Xiaomu,&Tong, Jingou.(2016).Comparative transcriptomic analyses of two bighead carp (Hypophthalmichthys nobilis) groups with different growth rates.COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS,20,111-117. |
| MLA | Fu, Beide,et al."Comparative transcriptomic analyses of two bighead carp (Hypophthalmichthys nobilis) groups with different growth rates".COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS 20(2016):111-117. |
入库方式： OAI收割
来源：水生生物研究所
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