Combinational effect of mutational bias and translational selection for translation efficiency in tomato (Solanum lycopersicum) cv. Micro-Tom
文献类型：期刊论文
| 作者 | Gaurav Sablok; XianMing Wu; Jimmy Kuo; Kinshuk Chandra Nayak; Vesselin Baev; Claudio Varotto; Fengfeng Zhou |
| 刊名 | GENOMICS
 |
| 出版日期 | 2013 |
| 英文摘要 | We conducted a comprehensive analysis of codon usage bias (CUB) based on the available non-redundant full-length cDNA (nrFLcDNA) and expressed sequence tags (ESTs) data of cultivar Micro-Tom and evaluated the associations of observed CUB and measurements of transcriptional and translational effectiveness. The analysis presented in our study suggests a correlation, which is negative but highly correlated between Axis 1 and GC3s (r = − 0.827, P < 0.01), indicating that mutational bias has a significant and dominant repressive role to the choices of GC3. We also observed a strong positive correlation between codon adaptation index (CAI) and translational adaptation index (tAIg) (0.407, P < 0.01), which demonstrates the facilitation of efficient translation by the optimal codon usage patterns of the highly expressed genes. We believe that the complete set of optimal codon usage patterns detected in this study will serve as a model to enhance the transgenesis in the studied cultivar of Solanum lycopersicum. |
| 收录类别 | SCI |
| 原文出处 | http://www.sciencedirect.com/science/article/pii/S0888754313000372 |
| 语种 | 英语 |
| 源URL | [http://ir.siat.ac.cn:8080/handle/172644/4834]  |
| 专题 | 深圳先进技术研究院_医工所 |
| 作者单位 | GENOMICS |
| 推荐引用方式 GB/T 7714 | Gaurav Sablok,XianMing Wu,Jimmy Kuo,et al. Combinational effect of mutational bias and translational selection for translation efficiency in tomato (Solanum lycopersicum) cv. Micro-Tom[J]. GENOMICS,2013. |
| APA | Gaurav Sablok.,XianMing Wu.,Jimmy Kuo.,Kinshuk Chandra Nayak.,Vesselin Baev.,...&Fengfeng Zhou.(2013).Combinational effect of mutational bias and translational selection for translation efficiency in tomato (Solanum lycopersicum) cv. Micro-Tom.GENOMICS. |
| MLA | Gaurav Sablok,et al."Combinational effect of mutational bias and translational selection for translation efficiency in tomato (Solanum lycopersicum) cv. Micro-Tom".GENOMICS (2013). |
入库方式： OAI收割
来源：深圳先进技术研究院
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