There is a lack of knowledge about how to quantify runoff generation and the hydrological processes operating in permafrost catchments on semi-arid plateaus. To understand how freeze-thaw cycles affect runoff generation processes in permafrost catchments, a typical headwater catchment with continuous permafrost on the Tibetan Plateau was measured. A new approach is presented in this study to account for runoff processes on the spring thawing period and autumn freezing period, when runoff generation clearly differs from that of non-permafrost catchments. This approach introduces a soil temperature based water saturation function and modifies the soil water storage curve with a soil temperature threshold. The results show that surface soil thawing induced saturation excess runoff and subsurface interflow account for approximately 66-86% and 14-34% of total spring runoff, respectively, and the soil temperature significantly affects the runoff generation pattern, the runoff composition and the runoff coefficient with the enlargement of the active layer. The suprapermafrost groundwater discharge decreases exponentially with active layer frozen processes during autumn runoff recession, whereas the ratio of groundwater discharge to total runoff and the direct surface runoff coefficient simultaneously increase. The bidirectional freezing of the active layer controls and changes the autumn runoff processes and runoff composition. The new approach could be used to further develop hydrological models of cold regions dominated by permafrost. (C) 2017 Elsevier B.V. All rights reserved.