Whole-genome based Archaea phylogeny and taxonomy: A composition vector approach
文献类型：期刊论文
| 作者 | Sun JianDong; Xu Zhao; Hao BaiLin; Hao, BL , Fudan Univ, Life Res Ctr T, Shanghai 200433, Peoples R China |
| 刊名 | CHINESE SCIENCE BULLETIN
 |
| 出版日期 | 2010 |
| 卷号 | 55期号:22页码:2323-2328 |
| 关键词 | Prokaryote Phylogeny Molecular Phylogeny Trees |
| ISSN号 | 1001-6538 |
| 英文摘要 | The newly proposed alignment-free and parameter-free composition vector (CVtree) method has been successfully applied to infer phylogenetic relationship of viruses, chloroplasts, bacteria, and fungi from their whole-genome data. In this study we pay special attention to the phylogenetic positions of 56 Archaea genomes among which 7 species have not been listed either in Bergey's Manual of Systematic Bacteriology or in Taxonomic Outline of Bacteria and Archaea (TOBA). By inspecting the stable monophyletic branchings in CVTrees reconstructed from a total of 861 genomes (56 Archaea plus 797 Bacteria, using 8 Eukarya as outgroups) definite taxonomic assignments were proposed for these not-fully-classified species. Further development of Archaea taxonomy may verify the predicted phylogenetic results of the CVTree approach. |
| 学科主题 | Physics |
| URL标识 | 查看原文 |
| WOS记录号 | WOS:000280808100002 |
| 公开日期 | 2012-08-02 |
| 源URL | [http://ir.itp.ac.cn/handle/311006/5070]  |
| 专题 | 理论物理研究所_理论物理所1978-2010年知识产出 |
| 通讯作者 | Hao, BL , Fudan Univ, Life Res Ctr T, Shanghai 200433, Peoples R China |
| 推荐引用方式 GB/T 7714 | Sun JianDong,Xu Zhao,Hao BaiLin,et al. Whole-genome based Archaea phylogeny and taxonomy: A composition vector approach[J]. CHINESE SCIENCE BULLETIN,2010,55(22):2323-2328. |
| APA | Sun JianDong,Xu Zhao,Hao BaiLin,&Hao, BL , Fudan Univ, Life Res Ctr T, Shanghai 200433, Peoples R China.(2010).Whole-genome based Archaea phylogeny and taxonomy: A composition vector approach.CHINESE SCIENCE BULLETIN,55(22),2323-2328. |
| MLA | Sun JianDong,et al."Whole-genome based Archaea phylogeny and taxonomy: A composition vector approach".CHINESE SCIENCE BULLETIN 55.22(2010):2323-2328. |
入库方式： OAI收割
来源：理论物理研究所
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