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TreeFam: a curated database of phylogenetic trees of animal gene families
文献类型：期刊论文
| 作者 | Wong, Gane Ka-Shu; Li, Heng; Coghlan, Avril; Ruan, Jue; Coin, Lachlan James; Heriche, Jean-Karim; Osmotherly, Lara; Li, Ruiqiang; Liu, Tao; Zhang, Zhang |
| 刊名 | NUCLEIC ACIDS RESEARCH
 |
| 出版日期 | 2006 |
| 卷号 | 34期号:34页码:D572-D580 |
| 关键词 | Protein Families Multigene Family Genome Orthologs Phylogenomics Paralogs Duplication Vertebrate Resources Evolution |
| ISSN号 | 0305-1048 |
| 英文摘要 | TreeFam is a database of phylogenetic trees of gene families found in animals. It aims to develop a curated resource that presents the accurate evolutionary history of all animal gene families, as well as reliable ortholog and paralog assignments. Curated families are being added progressively, based on seed alignments and trees in a similar fashion to Pfam. Release 1.1 of TreeFam contains curated trees for 690 families 25 and automatically generated trees for another 11 646 families. These represent over 128 000 genes from nine fully sequenced animal genomes and over 45 000 other animal proteins from UniProt; similar to 40 - 85% of proteins encoded in the fully sequenced animal genomes are included in TreeFam. TreeFam is freely available at http://www.treefam.org and http://treefam.genomics.org.cn. |
| 学科主题 | Physics |
| URL标识 | 查看原文 |
| WOS记录号 | WOS:000239307700123 |
| 公开日期 | 2012-08-02 |
| 源URL | [http://ir.itp.ac.cn/handle/311006/6068]  |
| 专题 | 理论物理研究所_理论物理所1978-2010年知识产出 |
| 通讯作者 | Durbin, R , Wellcome Trust Sanger Inst, Wellcome Trust Genome Campus, Cambridge CB10 1SA, England |
| 推荐引用方式 GB/T 7714 | Wong, Gane Ka-Shu,Li, Heng,Coghlan, Avril,et al. TreeFam: a curated database of phylogenetic trees of animal gene families[J]. NUCLEIC ACIDS RESEARCH,2006,34(34):D572-D580. |
| APA | Wong, Gane Ka-Shu.,Li, Heng.,Coghlan, Avril.,Ruan, Jue.,Coin, Lachlan James.,...&Durbin, R , Wellcome Trust Sanger Inst, Wellcome Trust Genome Campus, Cambridge CB10 1SA, England.(2006).TreeFam: a curated database of phylogenetic trees of animal gene families.NUCLEIC ACIDS RESEARCH,34(34),D572-D580. |
| MLA | Wong, Gane Ka-Shu,et al."TreeFam: a curated database of phylogenetic trees of animal gene families".NUCLEIC ACIDS RESEARCH 34.34(2006):D572-D580. |
入库方式： OAI收割
来源：理论物理研究所
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