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  2. 昆明植物研究所
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  4. 中国科学院东亚植物多样性与生物地理学重点实验室
Large multi-locus plastid phylogeny of the tribe Arundinarieae (Poaceae: Bambusoideae) reveals ten major lineages and low rate of molecular divergence

文献类型：期刊论文

作者Zeng, Chun-Xia1,2,3; Zhang, Yu-Xiao1,2,3; Triplett, Jimmy K.4; Yang, Jun-Bo1,3; Li, De-Zhu1,3
刊名MOLECULAR PHYLOGENETICS AND EVOLUTION
出版日期2010-08-01
卷号56期号:2页码:821-839
ISSN号1055-7903
关键词Arundinarieae China Chloroplast Dna Regions Large Sample Size Phylogenetic Analysis
DOI10.1016/j.ympev.2010.03.041
通讯作者dzl@mail.kib.ac.cn
文献子类Article
英文摘要The temperate bamboos (tribe Arundinarieae) are notorious for being taxonomically extremely difficult. China contains some of the world's greatest diversity of the tribe Arundinarieae, with most genera and species endemic. Previous investigation into phylogenetic relationships of the temperate bamboos revealed several major clades, but emphasis on the species-level relationships among taxa in North America and Japan. To further elucidate relationships among the temperate bamboos, a very broad sampling of Chinese representatives was examined. We produced 9463 bp of sequences from eight non-coding chloroplast regions for 146 species in 26 genera and 5 outgroups. The loci sequenced were atpl/H, psaA-ORF170, rp132-trnL, rpoB-trnC, rps16-trnQ trnD/T, trnS/G, and trnT/L. Phylogenetic analyses using maximum parsimony and Bayesian inference supported the monophyly of Arundinarieae. The two major subtribes, Arundinariinae and Shibataeinae, defined on the basis of different synflorescence types, were indicated to be polyphyletic. Most genera in this tribe were confirmed to be paraphyletic or polyphyletic. The cladograms suggest that Arundinarieae is divided into ten major lineages. In addition to six lineages suggested in a previous molecular study (Bergbamboes, the African alpine bamboos, Chimonocalamus, the Shibataea clade, the Phyllostachys clade, and the Arundinaria clade), four additional lineages were recovered in our results, each represented by a single species: Gaoligongshania megalothyrsa, Indocalamus sinicus, lndocalamus wilsonii. Thamnocalamus spathiflorus. Our analyses also indicate that (1) even more than 9000 bp of fast-evolving plastid sequence data cannot resolve the inter- and infra-relationships among and within the ten lineages of the tribe Arundinarieae; (2) an extensive sampling is indispensable for phylogeny reconstruction in this tribe, especially given that many genera appear to be paraphyletic or polyphyletic. Perhaps the ideal way to further illuminate relationships among the temperate bamboos is to sample multiple nuclear loci or whole chloroplast sequences in order to obtain sufficient variation. (c) 2010 Elsevier Inc. All rights reserved.
学科主题Biochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity
WOS关键词GRASS FAMILY POACEAE ; DNA-SEQUENCE DATA ; CHLOROPLAST DNA ; NONCODING REGIONS ; WOODY BAMBOOS ; THAMNOCALAMUS GROUP ; UNIVERSAL PRIMERS ; ALLIES GRAMINEAE ; GBSSI GENE ; NUCLEAR
WOS研究方向Biochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity
语种英语
WOS记录号WOS:000278890100030
资助机构National Basic Research Program of China (973 Program) [2007CB411601]; National Natural Science Foundation of China [30770154]; Chinese Academy of Sciences [KSCX2-YW-N-029]; National Geographic Society (U.S.A.) [7336-02]; National Science Foundation (U.S.A.) [DEB-0515712]
公开日期2011-12-20
源URL[http://ir.kib.ac.cn:8080/handle/151853/3020]  
专题昆明植物研究所_中国科学院东亚植物多样性与生物地理学重点实验室
作者单位1.Chinese Acad Sci, Kunming Inst Bot, Key Lab Biodivers & Biogeog, Kunming 650204, Yunnan, Peoples R China
2.Chinese Acad Sci, Grad Univ, Beijing 100049, Peoples R China
3.Gerrnplasm Bank Wild Species, Plant Germplasm & Genom Ctr, Kunming 650204, Yunnan, Peoples R China
4.Smithsonian Inst, Dept Biol, Natl Museum Nat Hist, Washington, DC 20013 USA
推荐引用方式
GB/T 7714		 Zeng, Chun-Xia,Zhang, Yu-Xiao,Triplett, Jimmy K.,et al. Large multi-locus plastid phylogeny of the tribe Arundinarieae (Poaceae: Bambusoideae) reveals ten major lineages and low rate of molecular divergence[J]. MOLECULAR PHYLOGENETICS AND EVOLUTION,2010,56(2):821-839.
APA Zeng, Chun-Xia,Zhang, Yu-Xiao,Triplett, Jimmy K.,Yang, Jun-Bo,&Li, De-Zhu.(2010).Large multi-locus plastid phylogeny of the tribe Arundinarieae (Poaceae: Bambusoideae) reveals ten major lineages and low rate of molecular divergence.MOLECULAR PHYLOGENETICS AND EVOLUTION,56(2),821-839.
MLA Zeng, Chun-Xia,et al."Large multi-locus plastid phylogeny of the tribe Arundinarieae (Poaceae: Bambusoideae) reveals ten major lineages and low rate of molecular divergence".MOLECULAR PHYLOGENETICS AND EVOLUTION 56.2(2010):821-839.

入库方式： OAI收割

来源：昆明植物研究所

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