中国科学院机构知识库网格
Chinese Academy of Sciences Institutional Repositories Grid
首页 机构 成果 学者
  
  1. CAS IR Grid
  2. 昆明植物研究所
  3. 中国科学院昆明植物研究所
  4. 中国科学院东亚植物多样性与生物地理学重点实验室
热门
Complete chloroplast genome sequence of Magnolia kwangsiensis (Magnoliaceae): implication for DNA barcoding and population genetics

文献类型：期刊论文

作者Kuang, Dai-Yong1,2; Wu, Hong2; Wang, Ya-Ling3; Gao, Lian-Ming4; Zhang, Shou-Zhou1; Lu, Lu1,2
刊名GENOME
出版日期2011-08-01
卷号54期号:8页码:663-673
关键词Magnolia Kwangsiensis Plastome Dna Barcoding Cpssr Rna Editing
ISSN号0831-2796
DOI10.1139/G11-026
通讯作者shouzhouz@yahoo.com.cn
文献子类Article
英文摘要Here, we report a completely sequenced plastome using Illumina/Solexa sequencing-by-synthesis (SBS) technology. The plastome of Magnolia kwangsiensis Figlar & Noot. is 159 667 bp in length with a typical quadripartite structure: 88 030 bp large single-copy (LSC) and 18 669 bp small single-copy (SSC) regions, separated by two 26 484 bp inverted repeat (IR) regions. The overall predicted gene number is 129, among which 17 genes are duplicated in PR regions. The plastome of M. kwangsiensis is identical in its gene order to previously published plastomes of magnoliids. Furthermore, the C-to-U type RNA editing frequency of 114 seed plants is positively correlated with plastome GC content and plastome length, whereas plastome length is not correlated with GC content. A total of 16 potential putative barcoding or low taxonomic level phylogenetic study markers in Magnoliaceae were detected by comparing the coding and noncoding regions of the plastome of M. kwangsiensis with that of Liriodendron tulipifera L. At least eight markers might be applied not only to Magnoliaceae but also to other taxa. The 86 mononucleotide cpSSRs that distributed in single-copy noncoding regions are highly valuable to study population genetics and conservation genetics of this endangered rare species.
学科主题Biotechnology & Applied Microbiology ; Genetics & Heredity
WOS关键词RNA EDITING SITES ; PHYLOGENETIC ANALYSIS ; LAND PLANTS ; ORGANELLAR GENOMES ; FLOWERING PLANTS ; PLASTID GENOME ; MAJOR LINEAGES ; SPACER REGION ; REPEATS ; GENES
WOS研究方向Biotechnology & Applied Microbiology ; Genetics & Heredity
语种英语
WOS记录号WOS:000295395100006
资助机构National Natural Science Foundation of China[30970180]; Chinese Academy of Sciences[2009-LSF-GBOWS-01]
公开日期2012-03-16
源URL[http://ir.kib.ac.cn:8080/handle/151853/3978]  
专题昆明植物研究所_中国科学院东亚植物多样性与生物地理学重点实验室
作者单位1.Shenzhen Fairy Lake Bot Garden, Shenzhen 518004, Guangdong, Peoples R China
2.S China Agr Univ, Guangzhou 510642, Guangdong, Peoples R China
3.Shaanxi Acad Sci, Xian Bot Garden, Xian 710061, Shaanxi, Peoples R China
4.Chinese Acad Sci, Kunming Inst Bot, Kunming 650204, Yunnan, Peoples R China
推荐引用方式
GB/T 7714		 Kuang, Dai-Yong,Wu, Hong,Wang, Ya-Ling,et al. Complete chloroplast genome sequence of Magnolia kwangsiensis (Magnoliaceae): implication for DNA barcoding and population genetics[J]. GENOME,2011,54(8):663-673.
APA Kuang, Dai-Yong,Wu, Hong,Wang, Ya-Ling,Gao, Lian-Ming,Zhang, Shou-Zhou,&Lu, Lu.(2011).Complete chloroplast genome sequence of Magnolia kwangsiensis (Magnoliaceae): implication for DNA barcoding and population genetics.GENOME,54(8),663-673.
MLA Kuang, Dai-Yong,et al."Complete chloroplast genome sequence of Magnolia kwangsiensis (Magnoliaceae): implication for DNA barcoding and population genetics".GENOME 54.8(2011):663-673.

入库方式： OAI收割

来源：昆明植物研究所

浏览0
下载0
收藏0
其他版本

除非特别说明，本系统中所有内容都受版权保护，并保留所有权利。