中国科学院机构知识库网格
Chinese Academy of Sciences Institutional Repositories Grid
Integrating fossils in a molecular-based phylogeny and testing them as calibration points for divergence time estimates in Menispermaceae

文献类型:期刊论文

作者Jacques, Frederic M. B.1,2; Wang, Wei1; Ortiz, Rosa Del C.3; Li, Hong-Lei1,4; Zhou, Zhe-Kun2,5; Chen, Zhi-Duan1
刊名JOURNAL OF SYSTEMATICS AND EVOLUTION
出版日期2011
卷号49期号:1页码:25-49
关键词Age Calibration Cross-validation Fossil Menispermaceae Molecular Scaffold Phylogeny
ISSN号1674-4918
DOI10.1111/j.1759-6831.2010.00105.x
通讯作者frederic.jacques@nigpas.ac.cn ; wangwei1127@ibcas.ac.cn ; rosa.ortiz-gentry@mobot.org ; zhiduan@ibcas.ac.cn
文献子类Article
英文摘要

The phylogeny of extant Menispermaceae (Ranunculales) is reconstructed based on DNA sequences of two chloroplast genes (rbcL and atpB) from 94 species belonging to 56 genera. Fossilized endocarps represent 34 genera. The positions of these are inferred using 30 morphological characters and the molecular phylogeny as a backbone constraint. Nine of the thirteen nodes that are each dated by a fossil are used as calibration points for the estimates of molecular divergence times. BEAST is used to estimate stem age (121.2 Myr) and crown age (105.4 Myr) for Menispermaceae. This method does not require an input tree topology and can also account for rate heterogeneity among lineages. The sensitivity of these estimates to fossil constraints is then evaluated by a cross-validation procedure. The estimated origin for Menispermaceae is dated to the mid-Jurassic if the customary maximum age of 125 Myr for eudicots is not implemented. All constraints when used alone failed to estimate node ages in some parts of the tree. Fossils from the Palaeocene and Eocene impose strict constraints. Likewise, the use of Prototinomiscium as a dating constraint for Menispermaceae appears to be a conservative approach.

学科主题Plant Sciences
WOS关键词RIBOSOMAL DNA-SEQUENCES ; FLOWERING PLANTS ; BASAL EUDICOTS ; ANGIOSPERM DIVERSIFICATION ; MAXIMUM-LIKELIHOOD ; GENE-SEQUENCES ; LIFE-HISTORY ; DATA SETS ; EVOLUTION ; EOCENE
WOS研究方向Plant Sciences
语种英语
WOS记录号WOS:000287469100003
资助机构973 grant[2007CB411601] ; Chinese Academy of Sciences[KSCX2-YW-R-136] ; Chinese post-doctorate grant[20080431286] ; Key Laboratory, Kunming Institute of Botany[086341121]
公开日期2012-03-16
源URL[http://ir.kib.ac.cn:8080/handle/151853/3992]  
专题昆明植物研究所_中国科学院东亚植物多样性与生物地理学重点实验室
作者单位1.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China
2.Chinese Acad Sci, Kunming Inst Bot, Dept Biodivers & Biogeog, Kunming 650204, Peoples R China
3.Missouri Bot Garden, St Louis, MO 63166 USA
4.Chinese Acad Sci, Grad Sch, Beijing 100049, Peoples R China
5.Chinese Acad Sci, Xishuangbanna Trop Bot Garden, Mengla 666303, Peoples R China
推荐引用方式
GB/T 7714
Jacques, Frederic M. B.,Wang, Wei,Ortiz, Rosa Del C.,et al. Integrating fossils in a molecular-based phylogeny and testing them as calibration points for divergence time estimates in Menispermaceae[J]. JOURNAL OF SYSTEMATICS AND EVOLUTION,2011,49(1):25-49.
APA Jacques, Frederic M. B.,Wang, Wei,Ortiz, Rosa Del C.,Li, Hong-Lei,Zhou, Zhe-Kun,&Chen, Zhi-Duan.(2011).Integrating fossils in a molecular-based phylogeny and testing them as calibration points for divergence time estimates in Menispermaceae.JOURNAL OF SYSTEMATICS AND EVOLUTION,49(1),25-49.
MLA Jacques, Frederic M. B.,et al."Integrating fossils in a molecular-based phylogeny and testing them as calibration points for divergence time estimates in Menispermaceae".JOURNAL OF SYSTEMATICS AND EVOLUTION 49.1(2011):25-49.

入库方式: OAI收割

来源:昆明植物研究所

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