RNA-QC-chain: comprehensive and fast quality control for RNA-Seq data
文献类型：期刊论文
| 作者 | Zhou, Qian1,2; Su, Xiaoquan3,4,5 ; Jing, Gongchao3,4; Chen, Songlin1,2; Ning, Kang6
|
| 刊名 | BMC GENOMICS
 |
| 出版日期 | 2018-02-14 |
| 卷号 | 19 |
| 关键词 | Quality Control Rna-seq Contamination Identification Alignment Statistics Parallel Computing |
| ISSN号 | 1471-2164 |
| DOI | 10.1186/s12864-018-4503-6 |
| 文献子类 | Article |
| 英文摘要 | Background: RNA-Seq has become one of the most widely used applications based on next-generation sequencing technology. However, raw RNA-Seq data may have quality issues, which can significantly distort analytical results and lead to erroneous conclusions. Therefore, the raw data must be subjected to vigorous quality control (QC) procedures before downstream analysis. Currently, an accurate and complete QC of RNA-Seq data requires of a suite of different QC tools used consecutively, which is inefficient in terms of usability, running time, file usage, and interpretability of the results. |
| WOS研究方向 | Biotechnology & Applied Microbiology ; Genetics & Heredity |
| 语种 | 英语 |
| WOS记录号 | WOS:000425518400001 |
| 出版者 | BIOMED CENTRAL LTD |
| 资助机构 | National Natural Science Foundation of China(31401076 ; Central Public-interest Scientific Institution Basal Research Fund, CAFS(2016RC-YJ01) ; Shandong Provincial Natural Science Foundation, China(ZR2017ZB0421) ; 31771463 ; 31671374) |
| 源URL | [http://ir.qibebt.ac.cn/handle/337004/10643]  |
| 专题 | 中国科学院青岛生物能源与过程研究所 |
| 通讯作者 | Chen, Songlin; Ning, Kang |
| 作者单位 | 1.Chinese Acad Fishery Sci, Key Lab Sustainable Dev Marine Fisheries, Minist Agr, Yellow Sea Fisheries Res Inst, Qingdao 266071, Shandong, Peoples R China 2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Fisheries Sci & Food Prod Proc, Qingdao 266071, Shandong, Peoples R China 3.Chinese Acad Sci, Qingdao Inst Bioenergy & Bioproc Technol, CAS Key Lab Biofuels, Shandong Key Lab Energy Genet, Qingdao 266101, Shandong, Peoples R China 4.Chinese Acad Sci, Qingdao Inst Bioenergy & Bioproc Technol, Single Cell Ctr, Qingdao 266101, Shandong, Peoples R China 5.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 6.Huazhong Univ Sci & Technol, Coll Life Sci & Technol, Hubei Key Lab Bioinformat & Mol Imaging, Minist Educ,Key Lab Mol Biophys,Dept Bioinformat, Wuhan 430074, Hubei, Peoples R China |
| 推荐引用方式 GB/T 7714 | Zhou, Qian,Su, Xiaoquan,Jing, Gongchao,et al. RNA-QC-chain: comprehensive and fast quality control for RNA-Seq data[J]. BMC GENOMICS,2018,19. |
| APA | Zhou, Qian,Su, Xiaoquan,Jing, Gongchao,Chen, Songlin,&Ning, Kang.(2018).RNA-QC-chain: comprehensive and fast quality control for RNA-Seq data.BMC GENOMICS,19. |
| MLA | Zhou, Qian,et al."RNA-QC-chain: comprehensive and fast quality control for RNA-Seq data".BMC GENOMICS 19(2018). |
入库方式： OAI收割
来源：青岛生物能源与过程研究所
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