Transcriptome analysis of genes involved in secondary cell wall biosynthesis in developing internodes of Miscanthus lutarioriparius
文献类型：期刊论文
| 作者 | Hu, Ruibo1 ; Xu, Yan1; Yu, Changjiang1; He, Kang1; Tang, Qi1; Jia, Chunlin2; He, Guo1; Wang, Xiaoyu1; Kong, Yingzhen3; Zhou, Gongke1
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| 刊名 | SCIENTIFIC REPORTS
 |
| 出版日期 | 2017-08-22 |
| 卷号 | 7 |
| DOI | 10.1038/s41598-017-08690-8 |
| 文献子类 | Article |
| 英文摘要 | Miscanthus is a promising lignocellulosic bioenergy crop for bioethanol production. To identify candidate genes and regulation networks involved in secondary cell wall (SCW) development in Miscanthus, we performed de novo transcriptome analysis of a developing internode. According to the histological and in-situ histochemical analysis, an elongating internode of M. lutarioriparius can be divided into three distinct segments, the upper internode (UI), middle internode (MI) and basal internode (BI), each representing a different stage of SCW development. The transcriptome analysis generated approximately 300 million clean reads, which were de novo assembled into 79,705 unigenes. Nearly 65% of unigenes was annotated in seven public databases. Comparative profiling among the UI, MI and BI revealed four distinct clusters. Moreover, detailed expression profiling was analyzed for gene families and transcription factors (TFs) involved in SCW biosynthesis, assembly and modification. Based on the co-expression patterns, putative regulatory networks between TFs and SCW-associated genes were constructed. The work provided the first transcriptome analysis of SCW development in M. lutarioriparius. The results obtained provide novel insights into the biosynthesis and regulation of SCW in Miscanthus. In addition, the genes identified represent good candidates for further functional studies to unravel their roles in SCW biosynthesis and modification. |
| WOS关键词 | GLUCURONOXYLAN BIOSYNTHESIS ; BIOMASS RECALCITRANCE ; LIGNOCELLULOSIC BIOMASS ; LIGNIN BIOSYNTHESIS ; CELLULOSE SYNTHESIS ; BIOFUEL PRODUCTION ; EXPRESSION DATA ; ARABIDOPSIS ; SYNTHASE ; REVEALS |
| WOS研究方向 | Science & Technology - Other Topics |
| 语种 | 英语 |
| WOS记录号 | WOS:000408279500002 |
| 资助机构 | National Natural Science Foundation of China(U1432126) ; National Key Technology Support Program of China(2013BAD22B01) ; Science and Technology Major Project of Shandong(2015ZDJS03001 ; Youth Innovation Promotion Association of CAS(2014187) ; Taishan Scholar Program of Shandong ; Youth Talent Plan of Chinese Academy of Agricultural Sciences ; 2016ZDJS10A04) |
| 源URL | [http://ir.qibebt.ac.cn/handle/337004/9596]  |
| 专题 | 青岛生物能源与过程研究所_植物代谢工程团队 |
| 作者单位 | 1.Chinese Acad Sci, Qingdao Inst Bioenergy & Bioproc Technol, Qingdao Engn Res Ctr Biomass Resources & Environm, Key Lab Biofuels, Qingdao 266101, Peoples R China 2.Shandong Inst Agr Sustainable Dev, Jinan 250100, Peoples R China 3.Chinese Acad Agr Sci, Tobacco Res Inst, Key Lab Tobacco Genet Improvement & Biotechnol, Qingdao 266101, Peoples R China |
| 推荐引用方式 GB/T 7714 | Hu, Ruibo,Xu, Yan,Yu, Changjiang,et al. Transcriptome analysis of genes involved in secondary cell wall biosynthesis in developing internodes of Miscanthus lutarioriparius[J]. SCIENTIFIC REPORTS,2017,7. |
| APA | Hu, Ruibo.,Xu, Yan.,Yu, Changjiang.,He, Kang.,Tang, Qi.,...&Zhou, Gongke.(2017).Transcriptome analysis of genes involved in secondary cell wall biosynthesis in developing internodes of Miscanthus lutarioriparius.SCIENTIFIC REPORTS,7. |
| MLA | Hu, Ruibo,et al."Transcriptome analysis of genes involved in secondary cell wall biosynthesis in developing internodes of Miscanthus lutarioriparius".SCIENTIFIC REPORTS 7(2017). |
入库方式： OAI收割
来源：青岛生物能源与过程研究所
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