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Mitochondrial phylogenomics reveals insights into taxonomy and evolution of Penaeoidea (Crustacea: Decapoda)

文献类型：期刊论文

作者Cheng, Jiao1,3,4; Chan, Tin-Yam5,6; Zhang, Nan1; Sun, Song1,3,4; Sha, Zhong-li1,2,3,4
刊名ZOOLOGICA SCRIPTA
出版日期2018-09-01
卷号47期号:5页码:582-594
关键词evolution mitochondrial genome Penaeoidea phylogeny taxonomy
ISSN号0300-3256
DOI10.1111/zsc.12298
英文摘要The taxonomy and phylogeny of Penaeoidea have long been fraught with controversy. Here, we carried out the first mitochondrial phylogenomic analysis on all the penaeoid families and tribes, including nine newly sequenced and 14 published mitogenomes, towards elucidating the phylogeny and evolutionary history of Penaeoidea. All these nine mitogenomes exhibit the pancrustacean ground pattern, except that Benthonectes filipes contains two additional clusters of tRNA(Ala), tRNA(Arg) and tRNA(Asn) and an uncommon noncoding region. The resulted phylogenetic tree is generally well resolved with Benthesicymidae sister to Aristeidae, forming a clade with Solenoceridae. Contrary to traditional classification, this clade has a sister relationship with the tribe Penaeini of the family Penaeidae. The family Sicyoniidae is deeply nested within the penaeid tribe Trachypenaeini which forms a sister clade with the remaining penaeid tribe, Parapenaeini. As the family Penaeidae is recovered to be polyphyletic, the three tribes in Penaeidae are all elevated to familial status. On the other hand, the family Sicyoniidae is retained to accommodate Trachypenaeini because they are now synonyms and the former name is more senior. This work is the first molecular analysis concurring with the latest findings in fossil assessments showing that Parapeaneini is the most primitive in Penaeoidae. Our results also illustrate a shallow-water origin and an onshore-offshore evolutionary shift in penaeoid shrimps.
WOS关键词DNA-SEQUENCES ; PHYLOGENETIC ANALYSIS ; MOLECULAR PHYLOGENY ; FOSSIL RECORD ; SEA ; GENOME ; SHRIMP ; PATTERNS ; ZOOGEOGRAPHY ; DUPLICATION
资助项目Chinese Academy of Sciences[QYZDBSSW-DQC036] ; Chinese Academy of Sciences[XDA11030201] ; Chinese Academy of Sciences[XDA1103040102] ; RV KEXUE[KEXUE2016G05] ; Ministry of Science and Technology in Taiwan ; Center of Excellence for the Oceans, National Taiwan Ocean University from The Featured Areas Research Center Program within the framework of the Higher Education Sprout Project by the Ministry of Education in Taiwan
WOS研究方向Evolutionary Biology ; Zoology
语种英语
WOS记录号WOS:000441447400006
出版者WILEY
资助机构Chinese Academy of Sciences ; RV KEXUE ; Ministry of Science and Technology in Taiwan ; Center of Excellence for the Oceans, National Taiwan Ocean University from The Featured Areas Research Center Program within the framework of the Higher Education Sprout Project by the Ministry of Education in Taiwan
源URL[http://ir.qibebt.ac.cn/handle/337004/12413]  
专题中国科学院青岛生物能源与过程研究所
通讯作者Sha, Zhong-li
作者单位1.Chinese Acad Sci, Inst Oceanol, Qingdao, Peoples R China
2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao, Peoples R China
3.Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao, Peoples R China
4.Univ Chinese Acad Sci, Beijing, Peoples R China
5.Natl Taiwan Ocean Univ, Inst Marine Biol, Keelung, Taiwan
6.Natl Taiwan Ocean Univ, Ctr Excellence Oceans, Keelung, Taiwan
推荐引用方式
GB/T 7714		 Cheng, Jiao,Chan, Tin-Yam,Zhang, Nan,et al. Mitochondrial phylogenomics reveals insights into taxonomy and evolution of Penaeoidea (Crustacea: Decapoda)[J]. ZOOLOGICA SCRIPTA,2018,47(5):582-594.
APA Cheng, Jiao,Chan, Tin-Yam,Zhang, Nan,Sun, Song,&Sha, Zhong-li.(2018).Mitochondrial phylogenomics reveals insights into taxonomy and evolution of Penaeoidea (Crustacea: Decapoda).ZOOLOGICA SCRIPTA,47(5),582-594.
MLA Cheng, Jiao,et al."Mitochondrial phylogenomics reveals insights into taxonomy and evolution of Penaeoidea (Crustacea: Decapoda)".ZOOLOGICA SCRIPTA 47.5(2018):582-594.

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来源：青岛生物能源与过程研究所

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