Comparative analysis of complete chloroplast genome sequences of two subtropical trees, Phoebe sheareri and Phoebe omeiensis (Lauraceae)
文献类型：期刊论文
| 作者 | Song, Yu; Yao, Xin; Tan, Yunhong; ...; Corlett, Richard T
|
| 刊名 | TREE GENETICS & GENOMES
 |
| 出版日期 | 2017 |
| 卷号 | 13期号:6 |
| 关键词 | Phoebe Lauraceae Chloroplast Genome Phylogenetic Relationship |
| 英文摘要 | Phoebe is an economically important genus from the family Lauraceae. It is widely distributed in tropical and subtropical Asia, but systematics of the genus is unclear, and currently there is no species-level phylogeny. Here, we determined the complete chloroplast genome sequences of two species with long-range PCR and next genome sequencing technologies, and identified mutation sites and highly variable regions. These highly variable sites were used to reconstruct the phylogeny. The plastomes of Phoebe sheareri and P. omeiensis were 152, 876, and 152, 855 bp, respectively. Comparative genomic analysis indicated that there are 222 mutation sites including 146 substitutions, 73 indels, and 3 microinversions in both plastomes. Fifty-six single-nucleotide changes were identified in gene-coding regions, and 45 microsatellite sites were found for use in species identification. Fourteen divergence hotspots of 38 variable regions were located. Phylogeny was reconstructed using a Bayesian and maximum likelihood approach for 12 Phoebe species and other five related Lauraceae based on 15 of the highly variable regions including accD-psaI, atpB-rbcL, ndhC-trnV, ndhF-rpl32, petA-psbJ, psaA, psbA-trnH, rbcL, rps8-rpl14, rps16-trnQ, rpl32-trnL, trnC-petN, trnL-trnF, trnS-trnG, and ycf1 indicated that variability in the chloroplast regions proposed as variable is enough to detect divergence events among 12 taxa of Phoebe, and that maybe also useful to help to elucidate further relationships among other taxa of the genus. |
| 语种 | 英语 |
| 公开日期 | 2017-11-24 |
| 源URL | [http://ir.xtbg.org.cn/handle/353005/10679]  |
| 专题 | 西双版纳热带植物园_2012年后新成立研究组 |
| 推荐引用方式 GB/T 7714 | Song, Yu,Yao, Xin,Tan, Yunhong,et al. Comparative analysis of complete chloroplast genome sequences of two subtropical trees, Phoebe sheareri and Phoebe omeiensis (Lauraceae)[J]. TREE GENETICS & GENOMES,2017,13(6). |
| APA | Song, Yu,Yao, Xin,Tan, Yunhong,...,&Corlett, Richard T.(2017).Comparative analysis of complete chloroplast genome sequences of two subtropical trees, Phoebe sheareri and Phoebe omeiensis (Lauraceae).TREE GENETICS & GENOMES,13(6). |
| MLA | Song, Yu,et al."Comparative analysis of complete chloroplast genome sequences of two subtropical trees, Phoebe sheareri and Phoebe omeiensis (Lauraceae)".TREE GENETICS & GENOMES 13.6(2017). |
入库方式： OAI收割
来源：西双版纳热带植物园
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