Transcriptome sequencing of three Ranunculus species (Ranunculaceae) reveals candidate genes in adaptation from terrestrial to aquatic habitats
文献类型：期刊论文
| 作者 | Zhao, Shu-Ying1; Moody, Michael L.2; Chen, Ling-Yun1; Wang, Qing-Feng1 |
| 刊名 | SCIENTIFIC REPORTS
 |
| 出版日期 | 2015-05-20 |
| 卷号 | 5页码:11 |
| ISSN号 | 2045-2322 |
| DOI | 10.1038/srep10098 |
| 英文摘要 | Adaptation to aquatic habitats is a formidable challenge for terrestrial angiosperms that has long intrigued scientists. As part of a suite of work to explore the molecular mechanism of adaptation to aquatic habitats, we here sequenced the transcriptome of the submerged aquatic plant Ranunculus bungei, and two terrestrial relatives R. cantoniensis and R. brotherusii, followed by comparative evolutionary analyses to determine candidate genes for adaption to aquatic habitats. We obtained 126,037, 140,218 and 114,753 contigs for R. bungei, R. cantoniensis and R. brotherusii respectively. Bidirectional Best Hit method and OrthoMCL method identified 11,362 and 8,174 1: 1: 1 orthologous genes (one ortholog is represented in each of the three species) respectively. Non-synonymous/synonymous (dN/dS) analyses were performed with a maximum likelihood method and an approximate method for the three species-pairs. In total, 14 genes of R. bungei potentially involved in the adaptive transition from terrestrial to aquatic habitats were identified. Some of the homologs to these genes in model plants are involved in vacuole protein formation, regulating 'water transport process' and 'microtubule cytoskeleton organization'. Our study opens the door to understand the molecular mechanism of plant adaptation from terrestrial to aquatic habitats. |
| 资助项目 | Chinese Academy of Sciences[XDAO5090305] ; National Natural Science Foundation of China[31300182] |
| WOS研究方向 | Science & Technology - Other Topics |
| 语种 | 英语 |
| WOS记录号 | WOS:000355391700001 |
| 出版者 | NATURE PUBLISHING GROUP |
| 源URL | [http://202.127.146.157/handle/2RYDP1HH/262]  |
| 专题 | 中国科学院武汉植物园 |
| 通讯作者 | Wang, Qing-Feng |
| 作者单位 | 1.Chinese Acad Sci, Wuhan Bot Garden, Key Lab Aquat Bot & Watershed Ecol, Wuhan 430074, Hubei, Peoples R China 2.Univ Texas El Paso, Dept Biol Sci, El Paso, TX 79968 USA |
| 推荐引用方式 GB/T 7714 | Zhao, Shu-Ying,Moody, Michael L.,Chen, Ling-Yun,et al. Transcriptome sequencing of three Ranunculus species (Ranunculaceae) reveals candidate genes in adaptation from terrestrial to aquatic habitats[J]. SCIENTIFIC REPORTS,2015,5:11. |
| APA | Zhao, Shu-Ying,Moody, Michael L.,Chen, Ling-Yun,&Wang, Qing-Feng.(2015).Transcriptome sequencing of three Ranunculus species (Ranunculaceae) reveals candidate genes in adaptation from terrestrial to aquatic habitats.SCIENTIFIC REPORTS,5,11. |
| MLA | Zhao, Shu-Ying,et al."Transcriptome sequencing of three Ranunculus species (Ranunculaceae) reveals candidate genes in adaptation from terrestrial to aquatic habitats".SCIENTIFIC REPORTS 5(2015):11. |
入库方式： OAI收割
来源：武汉植物园
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