Whole transcriptome sequencing of Pseudomonas syringae pv. actinidiae-infected kiwifruit plants reveals species-specific interaction between long non-coding RNA and coding genes
文献类型：期刊论文
| 作者 | Huang, Hongwen2,3,4; Wang, Zupeng1,3,4; Liu, Yifei3,4; Li, Li2; Li, Dawei2; Zhang, Qiong2; Guo, Yangtao1,3,4; Wang, Shuaibin1,3,4; Zhong, Caihong2 |
| 刊名 | SCIENTIFIC REPORTS
 |
| 出版日期 | 2017-07-07 |
| 卷号 | 7页码:15 |
| ISSN号 | 2045-2322 |
| DOI | 10.1038/s41598-017-05377-y |
| 英文摘要 | An outbreak of kiwifruit bacterial canker disease caused by Pseudomonas syringae pv. actinidiae (Psa) beginning in 2008 caused disaster to the kiwifruit industry. However the mechanisms of interaction between kiwifruit and Psa are unknown. Long noncoding RNAs (lncRNAs) are known to regulate many biological processes, but comprehensive repertoires of kiwifruit lncRNAs and their effects on the interaction between kiwifruit and Psa are unknown. Here, based on in-depth transcriptomic analysis of four kiwifruit materials at three stages of infection with Psa, we identified 14,845 transcripts from 12,280 loci as putative lncRNAs. Hierarchical clustering analysis of differentially-expressed transcripts reveals that both protein-coding and lncRNA transcripts are expressed species-specifically. Comparing differentially-expressed transcripts from different species, variations in pattern-triggered immunity (PTI) were the main causes of species-specific responses to infection by Psa. Using weighted gene co-expression network analysis, we identified species-specific expressed key lncRNAs which were closely related to plant immune response and signal transduction. Our results illustrate that different kiwifruit species employ multiple different plant immunity layers to fight against Psa infection, which causes distinct responses. We also discovered that lncRNAs might affect kiwifruit responses to Psa infection, indicating that both protein-coding regions and noncoding regions can affect kiwifruit response to Psa infection. |
| 资助项目 | National Natural Science Foundation of China[31471847] ; National Natural Science Foundation of China[31572092] ; Science and Technology Service Network Initiative of Chinese Academy[KFJ-EW-STS-076] ; Crop Germplasm Conservation Project Foundation of China[2016NWB027] |
| WOS研究方向 | Science & Technology - Other Topics |
| 语种 | 英语 |
| WOS记录号 | WOS:000404970900072 |
| 出版者 | NATURE PUBLISHING GROUP |
| 源URL | [http://202.127.146.157/handle/2RYDP1HH/1340]  |
| 专题 | 中国科学院武汉植物园 |
| 通讯作者 | Huang, Hongwen; Liu, Yifei |
| 作者单位 | 1.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 2.Chinese Acad Sci, Wuhan Bot Garden, Key Lab Plant Germplasm Enhancement & Specially A, Wuhan 430074, Hubei, Peoples R China 3.Chinese Acad Sci, Key Lab Plant Resources Conservat & Sustainable U, South China Bot Garden, Guangzhou 510650, Guangdong, Peoples R China 4.Guangdong Prov Key Lab Appl Bot, Guangzhou 510650, Guangdong, Peoples R China |
| 推荐引用方式 GB/T 7714 | Huang, Hongwen,Wang, Zupeng,Liu, Yifei,et al. Whole transcriptome sequencing of Pseudomonas syringae pv. actinidiae-infected kiwifruit plants reveals species-specific interaction between long non-coding RNA and coding genes[J]. SCIENTIFIC REPORTS,2017,7:15. |
| APA | Huang, Hongwen.,Wang, Zupeng.,Liu, Yifei.,Li, Li.,Li, Dawei.,...&Zhong, Caihong.(2017).Whole transcriptome sequencing of Pseudomonas syringae pv. actinidiae-infected kiwifruit plants reveals species-specific interaction between long non-coding RNA and coding genes.SCIENTIFIC REPORTS,7,15. |
| MLA | Huang, Hongwen,et al."Whole transcriptome sequencing of Pseudomonas syringae pv. actinidiae-infected kiwifruit plants reveals species-specific interaction between long non-coding RNA and coding genes".SCIENTIFIC REPORTS 7(2017):15. |
入库方式： OAI收割
来源：武汉植物园
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