Characterization and Comparative Analysis of the Complete Chloroplast Genome of the Critically Endangered Species Streptocarpus teitensis (Gesneriaceae)
文献类型：期刊论文
| 作者 | Kyalo, Cornelius M.1,2,3; Gichira, Andrew W.1,2,3; Li, Zhi-Zhong1,2,3; Saina, Josphat K.1,2,3; Malombe, Itambo4; Hu, Guang-Wan1,3; Wang, Qing-Feng1,3 |
| 刊名 | BIOMED RESEARCH INTERNATIONAL
 |
| 出版日期 | 2018 |
| 页码 | 11 |
| ISSN号 | 2314-6133 |
| DOI | 10.1155/2018/1507847 |
| 英文摘要 | Streptocarpus teitensis (Gesneriaceae) is an endemic species listed as critically endangered in the International Union for Conservation of Nature (IUCN) red list of threatened species. However, the sequence and genome information of this species remains to be limited. In this article, we present the complete chloroplast genome structure of Streptocarpus teitensis and its evolution inferred through comparative studies with other related species. S. teitensis displayed a chloroplast genome size of 153,207 bp, sheltering a pair of inverted repeats (IR) of 25,402 bp each split by small and large single-copy (SSC and LSC) regions of 18,300 and 84,103 bp, respectively. The chloroplast genome was observed to contain 116 unique genes, of which 80 are protein-coding, 32 are transfer RNAs, and four are ribosomal RNAs. In addition, a total of 196 SSR markers were detected in the chloroplast genome of Streptocarpus teitensis with mononucleotides (57.1%) being the majority, followed by trinucleotides (33.2%) and dinucleotides and tetranucleotides (both 4.1%), and pentanucleotides being the least (1.5%). Genome alignment indicated that this genome was comparable to other sequenced members of order Lamiales. The phylogenetic analysis suggested that Streptocarpus teitensis is closely related to Lysionotus pauciflorus and Dorcoceras hygrometricum. |
| 资助项目 | University of Chinese Academy of Sciences (UCAS) ; Wuhan Botanical Garden (WBG) ; Sino-Africa Joint Research Center (SAJOREC)[Y323771W07] ; Sino-Africa Joint Research Center (SAJOREC)[SAJC201322] |
| WOS研究方向 | Biotechnology & Applied Microbiology ; Research & Experimental Medicine |
| 语种 | 英语 |
| WOS记录号 | WOS:000428156000001 |
| 出版者 | HINDAWI LTD |
| 源URL | [http://202.127.146.157/handle/2RYDP1HH/3385]  |
| 专题 | 中国科学院武汉植物园 |
| 通讯作者 | Hu, Guang-Wan; Wang, Qing-Feng |
| 作者单位 | 1.Chinese Acad Sci, Wuhan Bot Garden, Key Lab Aquat Bot & Watershed Ecol, Wuhan 430074, Hubei, Peoples R China 2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 3.Chinese Acad Sci, Sino Africa Joint Res Ctr, Wuhan 430074, Hubei, Peoples R China 4.Natl Museums Kenya, East African Herbarium, POB 45166-00100, Nairobi, Kenya |
| 推荐引用方式 GB/T 7714 | Kyalo, Cornelius M.,Gichira, Andrew W.,Li, Zhi-Zhong,et al. Characterization and Comparative Analysis of the Complete Chloroplast Genome of the Critically Endangered Species Streptocarpus teitensis (Gesneriaceae)[J]. BIOMED RESEARCH INTERNATIONAL,2018:11. |
| APA | Kyalo, Cornelius M..,Gichira, Andrew W..,Li, Zhi-Zhong.,Saina, Josphat K..,Malombe, Itambo.,...&Wang, Qing-Feng.(2018).Characterization and Comparative Analysis of the Complete Chloroplast Genome of the Critically Endangered Species Streptocarpus teitensis (Gesneriaceae).BIOMED RESEARCH INTERNATIONAL,11. |
| MLA | Kyalo, Cornelius M.,et al."Characterization and Comparative Analysis of the Complete Chloroplast Genome of the Critically Endangered Species Streptocarpus teitensis (Gesneriaceae)".BIOMED RESEARCH INTERNATIONAL (2018):11. |
入库方式： OAI收割
来源：武汉植物园
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