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Complete plastome sequencing from Toona (Meliaceae) and phylogenomic analyses within Sapindales

文献类型：期刊论文

作者Moore, Michael J.1; Deng, Tao2; Sun, Hang2; Yang, Lin-sen4; Sun, Yan-xia3; Wang, Heng-chang3; Lin, Nan2,3,5
刊名APPLICATIONS IN PLANT SCIENCES
出版日期2018-04-01
卷号6期号:4页码:11
关键词phylogenomic analysis plastome Sapindales structure Toona
ISSN号2168-0450
DOI10.1002/aps3.1040
英文摘要PREMISE OF THE STUDY: Toona (Meliaceae, Sapindales) is a small genus of five species of trees native from southern and eastern Asia to New Guinea and Australia. Complete plastomes were sequenced for three Toona species to provide a basis for future plastome genetic studies in threatened species of Toona. In addition, plastome structural evolution and phylogenetic relationships across Sapindales were explored with a larger data set of 29 Sapindales plastomes (including members of six out of nine families). METHODS: The plastomes were determined using the Illumina sequencing platform; the phylogenetic analyses were conducted using maximum likelihood by RAxML. RESULTS: The lengths of three Toona plastomes range from 159,185 to 158,196 bp. A total of 113 unique genes were found in each plastome. Across Sapindales, plastome gene structure and content were largely conserved, with the exception of the contraction of the inverted repeat region to exclude ycf1 in some species of Rutaceae and Sapindaceae, and the movement of trnI-GAU and trnA-UGC to a position outside the inverted repeat region in some Rutaceae species. DISCUSSION: The three Toona plastomes possess the typical structure of angiosperm plastomes. Phylogenomic analysis of Sapindales recovered a mostly strongly supported phylogeny of Sapindales, including most of the backbone relationships, with some improvements compared to previous targeted-gene analyses.
资助项目National Key Research and Development Program of China[2017YFC0505200] ; National Natural Science Foundation of China[31590823] ; National Natural Science Foundation of China[31370223]
WOS研究方向Plant Sciences
语种英语
WOS记录号WOS:000431969600001
出版者BOTANICAL SOC AMER INC
源URL[http://202.127.146.157/handle/2RYDP1HH/5311]  
专题中国科学院武汉植物园
通讯作者Sun, Yan-xia; Wang, Heng-chang
作者单位1.Oberlin Coll, Dept Biol, Oberlin, OH 44074 USA
2.Chinese Acad Sci, Key Lab Plant Divers & Biogeog East Asia, Kunming Inst Bot, Kunming, Yunnan, Peoples R China
3.Chinese Acad Sci, Key Lab Plant Germplasm Enhancement & Specialty A, Wuhan Bot Garden, Wuhan, Hubei, Peoples R China
4.Adm Shennongjia Natl Pk, Hubei Key Lab Shennongjia Golden Monkey Conservat, Shennongjia, Hubei, Peoples R China
5.Univ Chinese Acad Sci, Beijing, Peoples R China
推荐引用方式
GB/T 7714		 Moore, Michael J.,Deng, Tao,Sun, Hang,et al. Complete plastome sequencing from Toona (Meliaceae) and phylogenomic analyses within Sapindales[J]. APPLICATIONS IN PLANT SCIENCES,2018,6(4):11.
APA Moore, Michael J..,Deng, Tao.,Sun, Hang.,Yang, Lin-sen.,Sun, Yan-xia.,...&Lin, Nan.(2018).Complete plastome sequencing from Toona (Meliaceae) and phylogenomic analyses within Sapindales.APPLICATIONS IN PLANT SCIENCES,6(4),11.
MLA Moore, Michael J.,et al."Complete plastome sequencing from Toona (Meliaceae) and phylogenomic analyses within Sapindales".APPLICATIONS IN PLANT SCIENCES 6.4(2018):11.

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