The Complete Chloroplast Genomes of Two Lancea Species with Comparative Analysis
文献类型：期刊论文
| 作者 | Chen, Shilong1,3 ; Zhang, Faqi1,3; Gao, Qingbo1,3; Wang, Jiuli1,2,3; Chi, Xiaofeng1,2,3
|
| 刊名 | MOLECULES
 |
| 出版日期 | 2018-03-01 |
| 卷号 | 23期号:3 |
| 关键词 | Mazaceae Laminales Organellar Genome Phylogenetic Analysis |
| ISSN号 | 1420-3049 |
| DOI | 10.3390/molecules23030602 |
| 文献子类 | Article |
| 英文摘要 | The genus Lancea is native to the Qinghai-Tibetan Plateau and consists of two species, Lancea tibetica Hook. f. et Thorns. and Lancea hirsuta Bonati. Here, we report the complete sequences of the chloroplast genomes of L. tibetica and L. hirsuta, which were 153,665 and 154,045 bp in length, respectively, and each included a pair of inverted repeated regions (25,624 and 25,838 bp in length, respectively) that were separated by a large single copy region (84,401 and 84,588 bp in length, respectively) and a smaller single copy region (18,016 and 17,781 bp in length, respectively). A total of 106 genes in L. tibetica and 105 in L. hirsuta comprised 79 protein-coding genes, and 4 ribosomal RNA (rRNA) genes, as well as 23 and 22 transfer RNA (tRNA) genes in L. tibetica and L. hirsuta, respectively. The gene order, content, and orientation of the two Lancea chloroplast genomes exhibited high similarity. A large number of informative repetitive sequences, including SSRs, were observed in both genomes. Comparisons of the genomes with those of three other Lamiales species revealed 12 highly divergent regions in the intergenic spacers and in the matK, rpoA, rps19, ndhF , ccsA, ndhD, and ycf1 coding regions. A phylogenomic analysis suggested that Lancea forms a monophyletic group that is closely related to the Glade composed of the families Phrymaceae, Paulowniaceae, and Rehmanniaceae. |
| WOS关键词 | LANCEA-TIBETICA ; SCROPHULARIACEAE ; PERFORMANCE ; PLACEMENT ; SEQUENCES ; SOFTWARE ; TOOL |
| WOS研究方向 | Biochemistry & Molecular Biology ; Chemistry |
| 语种 | 英语 |
| WOS记录号 | WOS:000428514100093 |
| 出版者 | MDPI |
| 资助机构 | Applied Basic Research Programs of Qinghai Province(2016-ZJ-761) ; Qinghai Provincial Key Laboratory of Crop Molecular Breeding(2017-ZJ-Y14) |
| 源URL | [http://ir.nwipb.ac.cn/handle/363003/13826]  |
| 专题 | 西北高原生物研究所_中国科学院西北高原生物研究所 |
| 通讯作者 | Chen, Shilong; Zhang, Faqi |
| 作者单位 | 1.Qinghai Prov Key Lab Crop Mol Breeding, Xining 810001, Qinghai, Peoples R China 2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 3.Chinese Acad Sci, Northwest Inst Plateau Biol, Key Lab Adaptat & Evolut Plateau Biota, Xining 810001, Qinghai, Peoples R China |
| 推荐引用方式 GB/T 7714 | Chen, Shilong,Zhang, Faqi,Gao, Qingbo,et al. The Complete Chloroplast Genomes of Two Lancea Species with Comparative Analysis[J]. MOLECULES,2018,23(3). |
| APA | Chen, Shilong,Zhang, Faqi,Gao, Qingbo,Wang, Jiuli,&Chi, Xiaofeng.(2018).The Complete Chloroplast Genomes of Two Lancea Species with Comparative Analysis.MOLECULES,23(3). |
| MLA | Chen, Shilong,et al."The Complete Chloroplast Genomes of Two Lancea Species with Comparative Analysis".MOLECULES 23.3(2018). |
入库方式： OAI收割
来源：西北高原生物研究所
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