The late pulse occurring in photomultiplier tubes (PMTS) is attributed to photoelectron backscattering. The small effective open area of microchannel plates (MCPs) increases the probability of photoelectrons bouncing on the front surface of MCPs and aggravates late pulses. In this work, a three-dimensional MCP-PMT model is developed in CST particle studio, a powerful electromagnetic field simulation program, to evaluate the effects of secondary emission yield (SEY) property of the MCP input facet and electric field on the photoelectron backscattering. Timing properties and the number of collected electrons are extracted without smearing due to electronic noise and finite pulse width. Results predict that the collection efficiency (CE) and the time performance can be improved by coating the MCP Nickel-Chromium input electrode with a high SEY material and operating in a proper photocathode-MCP bias voltage. (C) 2017 Elsevier B.V. All rights reserved.