Combining multi-channel seismic reflection and gravity modeling, this study has investigated the crustal structure of the northwestern South China Sea margin. These data constrain a hyper-extended crustal area bounded by basin-bounding faults corresponding to an aborted rift below the Xisha Trough with a subparallel fossil ridge in the adjacent Northwest Sub-basin. The thinnest crust is located in the Xisha Trough, where it is remnant lower crust with a thickness of less than 3 km. Gravity modeling also revealed a hyper-extended crust across the Xisha Trough. The postrift magmatism is well developed and more active in the Xisha Trough and farther southeast than on the northwestern continental margin of the South China Sea; and the magmatic intrusion/extrusion was relatively active during the rifting of Xisha Trough and the Northwest Sub-basin. A narrow continent-ocean transition zone with a width of approximate to 65 km bounded seaward by a volcanic buried seamount is characterized by crustal thinning, rift depression, low gravity anomaly and the termination of the break-up unconformity seismic reflection. The aborted rift near the continental margin means that there may be no obvious detachment fault like that in the Iberia-Newfoundland type margin. The symmetric rift, extreme hyper-extended continental crust and hotter mantle materials indicate that continental crust underwent stretching phase (pure-shear deformation), thinning phase and breakup followed by onset of seafloor spreading and the mantle-lithosphere may break up before crustal-necking in the northwestern South China Sea margin.