Characterization of the complete chloroplast genome of a critically endangered decaploid rose species, Rosa praelucens (Rosaceae)
文献类型：期刊论文
| 作者 | Jian, Hong-ying1; Zhang, Shu-dong2; Zhang, Ting1; Qiu, Xian-qin1; Yan, Hui-jun1; Li, Shu-bin1; Wang, Qi-gang1; Tang, Kai-xue1 |
| 刊名 | CONSERVATION GENETICS RESOURCES
 |
| 出版日期 | 2018-12-01 |
| 卷号 | 10期号:4页码:851-854 |
| 关键词 | Rosa praelucens Chloroplast genome Critically endangered species Phylogenetic analysis |
| ISSN号 | 1877-7252 |
| 英文摘要 | Rosa praelucens is a critically endangered alpine ornamental plant and a decaploid wild rose endemic to southwestern China. In this study, we reported its complete chloroplast genome which was de novo assembled based on next generation sequencing. The plastome was a quadripartite circular with 157,186 bp in length, including one large single copy region of 86,313 bp and one small single copy region of 18,765 bp, separated by two inverted repeat regions of 26,054 bp. The overall GC content of the genome was 37.2%, while those of LSC, SSC and IR regions were 35.2, 31.2 and 42.7%, respectively. The genome encoded 129 genes, including 84 protein-coding genes, 37 transfer RNA genes, and eight ribosomal RNA genes. Maximum likelihood phylogenetic analysis showed that sampled species from the genus Rosa formed a monophyletic clade and R. praelucens was sister to other members of the subgenus Rosa. |
| 资助项目 | National Natural Scientific Foundation of China[31560301] ; National Natural Scientific Foundation of China[31260198] ; Strategic Priority Research Program of the Chinese Academy of Sciences[XDPB0201] ; Academic and Technical Talent Training Project of Yunnan Province, China[2013HB092] |
| 语种 | 英语 |
| 资助机构 | National Natural Scientific Foundation of China ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Academic and Technical Talent Training Project of Yunnan Province, China |
| 源URL | [http://ir.kib.ac.cn/handle/151853/64430]  |
| 专题 | 昆明植物研究所_中国西南野生生物种质资源库 |
| 通讯作者 | Tang, Kai-xue |
| 作者单位 | 1.Yunnan Acad Agr Sci, Flower Res Inst, Natl Engn Res Ctr Ornamental Hort, Kunming 650205, Yunnan, Peoples R China 2.Chinese Acad Sci, Germplasm Bank Wild Species, Kunming Inst Bot, Kunming 650201, Yunnan, Peoples R China |
| 推荐引用方式 GB/T 7714 | Jian, Hong-ying,Zhang, Shu-dong,Zhang, Ting,et al. Characterization of the complete chloroplast genome of a critically endangered decaploid rose species, Rosa praelucens (Rosaceae)[J]. CONSERVATION GENETICS RESOURCES,2018,10(4):851-854. |
| APA | Jian, Hong-ying.,Zhang, Shu-dong.,Zhang, Ting.,Qiu, Xian-qin.,Yan, Hui-jun.,...&Tang, Kai-xue.(2018).Characterization of the complete chloroplast genome of a critically endangered decaploid rose species, Rosa praelucens (Rosaceae).CONSERVATION GENETICS RESOURCES,10(4),851-854. |
| MLA | Jian, Hong-ying,et al."Characterization of the complete chloroplast genome of a critically endangered decaploid rose species, Rosa praelucens (Rosaceae)".CONSERVATION GENETICS RESOURCES 10.4(2018):851-854. |
入库方式： OAI收割
来源：昆明植物研究所
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