Characterization of the complete chloroplast genome of the relict Chinese false tupelo, Camptotheca acuminata
文献类型：期刊论文
| 作者 | Chen, Si-Yun2; Zhang, Xian-Zhi1
|
| 刊名 | CONSERVATION GENETICS RESOURCES
 |
| 出版日期 | 2018-12-01 |
| 卷号 | 10期号:4页码:659-662 |
| 关键词 | Camptotheca acuminata Chloroplast genome Phylogenomics |
| ISSN号 | 1877-7252 |
| 英文摘要 | The Chinese false tupelo, Camptotheca acuminata, is a Tertiary relict species with dramatically fragmented and declined populations. Here we characterized the complete chloroplast (cp) genome of C. acuminata using Illumina pair-end sequencing data. The C. acuminata cp genome was 157,806 bp in length, containing a pair of inverted repeats (IRs) of 25,771 bp which separated a large single copy region (LSC) of 87,504 bp and a small single copy region (SSC) of 18,760 bp. The genome contained 134 genes, including 88 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Most of genes occurred as single-copy in the LSC or SSC, while 18 genes had two copies in the IRs. The GC content of C. acuminata cp genome is 37.8%. Phylogenomic analysis strongly supported the close relationship of C. acuminata and Davidia involucrata. This complete cp genome will be useful for further conservation genomics studies of C. acuminata. |
| 资助项目 | National Natural Science Foundation of China[31600173] ; Basic Science Fund of Northwest AF University[2452016052] |
| 语种 | 英语 |
| 资助机构 | National Natural Science Foundation of China ; Basic Science Fund of Northwest AF University |
| 源URL | [http://ir.kib.ac.cn/handle/151853/64436]  |
| 专题 | 昆明植物研究所_中国西南野生生物种质资源库 |
| 通讯作者 | Zhang, Xian-Zhi |
| 作者单位 | 1.Northwest A&F Univ, Coll Forestry, Yangling 712100, Shaanxi, Peoples R China 2.Chinese Acad Sci, Kunming Inst Bot, Germplasm Bank Wild Species, Kunming 650201, Yunnan, Peoples R China |
| 推荐引用方式 GB/T 7714 | Chen, Si-Yun,Zhang, Xian-Zhi. Characterization of the complete chloroplast genome of the relict Chinese false tupelo, Camptotheca acuminata[J]. CONSERVATION GENETICS RESOURCES,2018,10(4):659-662. |
| APA | Chen, Si-Yun,&Zhang, Xian-Zhi.(2018).Characterization of the complete chloroplast genome of the relict Chinese false tupelo, Camptotheca acuminata.CONSERVATION GENETICS RESOURCES,10(4),659-662. |
| MLA | Chen, Si-Yun,et al."Characterization of the complete chloroplast genome of the relict Chinese false tupelo, Camptotheca acuminata".CONSERVATION GENETICS RESOURCES 10.4(2018):659-662. |
入库方式： OAI收割
来源：昆明植物研究所
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