PenBase, the shrimp antimicrobial peptide penaeidin database: Sequence-based classification and recommended nomenclature
文献类型：期刊论文
| 作者 | Gueguen, Y; Garnier, J; Robert, L; Lefranc, MP; Mougenot, I; de Lorgeril, J; Janech, M; Gross, PS; Warr, GW; Cuthbertson, B |
| 刊名 | DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
 |
| 出版日期 | 2006 |
| 卷号 | 30期号:3页码:283-288 |
| 关键词 | Penaeidin Penaeid Shrimp Antimicrobial Peptide Crustacea Sequence Database Nomenclature |
| ISSN号 | 0145-305X |
| DOI | 10.1016/j.dci.2005.04.003 |
| 文献子类 | Article |
| 英文摘要 | Antimicrobial peptides play a major role in innate immunity. The penaeidins, initially characterized from the shrimp Litopenaeus vannamei, are a family of antimicrobial peptides that appear to be expressed in all penaeid shrimps. As of recent, a large number of penaeid nucleotide sequences have been identified from a variety of penaeid shrimp species and these sequences currently reside in several databases under unique identifiers with no nomenclatural continuity. To facilitate research in this field and avoid potential confusion due to a diverse number of nomenclatural designations, we have made a systematic effort to collect, analyse, and classify all the penaeidin sequences available in every database. We have identified a common penaeidin signature and subsequently established a classification based on amino acid sequences. In order to clarify the naming process, we have introduced a 'penaeidin nomenclature' that can be applied to all extant and future penaeidins. A specialized database, PenBase, which is freely available at http://www.penbase.immunaqua.com, has been developed for the penaeidin family of antimicrobial peptides, to provide comprehensive information about their properties, diversity and nomenclature. (c) 2005 Elsevier Ltd. All rights reserved.; Antimicrobial peptides play a major role in innate immunity. The penaeidins, initially characterized from the shrimp Litopenaeus vannamei, are a family of antimicrobial peptides that appear to be expressed in all penaeid shrimps. As of recent, a large number of penaeid nucleotide sequences have been identified from a variety of penaeid shrimp species and these sequences currently reside in several databases under unique identifiers with no nomenclatural continuity. To facilitate research in this field and avoid potential confusion due to a diverse number of nomenclatural designations, we have made a systematic effort to collect, analyse, and classify all the penaeidin sequences available in every database. We have identified a common penaeidin signature and subsequently established a classification based on amino acid sequences. In order to clarify the naming process, we have introduced a 'penaeidin nomenclature' that can be applied to all extant and future penaeidins. A specialized database, PenBase, which is freely available at http://www.penbase.immunaqua.com, has been developed for the penaeidin family of antimicrobial peptides, to provide comprehensive information about their properties, diversity and nomenclature. (c) 2005 Elsevier Ltd. All rights reserved. |
| 学科主题 | Immunology ; Zoology |
| URL标识 | 查看原文 |
| 语种 | 英语 |
| WOS记录号 | WOS:000234732500005 |
| 公开日期 | 2010-12-24 |
| 源URL | [http://ir.qdio.ac.cn/handle/337002/5897]  |
| 专题 | 海洋研究所_实验海洋生物学重点实验室 |
| 作者单位 | 1.Univ Montpellier 2, CNRS, Ifremer, F-34095 Montpellier 6, France 2.Univ Montpellier 2, LIGM, Inst France, UPR 1142,CNRS, F-34396 Montpellier, France 3.UM2, CNRS, UMR 5506, LIRMM, F-34392 Montpellier 5, France 4.Med Univ S Carolina, Dept Biochem & Mol Biol, Charleston, SC 29425 USA 5.Univ Fed Santa Catarina, Dept Biol Celular Embriol & Genet, Florianopolis, SC, Brazil 6.Atheris Labs, CH-1233 Geneva, Switzerland 7.Univ Montpellier 1, Ctr Biochim Struct, F-34060 Montpellier 2, France 8.Chinese Acad Sci, Inst Oceanol, Qingdao 266071, Peoples R China 9.Chulalongkorn Univ, Dept Biochem, Fac Sci, Shrimp Mol Biol & Genom Lab, Bangkok 10330, Thailand 10.Univ Montpellier 2, Skuld Tech Co, F-34095 Montpellier 5, France |
| 推荐引用方式 GB/T 7714 | Gueguen, Y,Garnier, J,Robert, L,et al. PenBase, the shrimp antimicrobial peptide penaeidin database: Sequence-based classification and recommended nomenclature[J]. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY,2006,30(3):283-288. |
| APA | Gueguen, Y.,Garnier, J.,Robert, L.,Lefranc, MP.,Mougenot, I.,...&Bachere, E.(2006).PenBase, the shrimp antimicrobial peptide penaeidin database: Sequence-based classification and recommended nomenclature.DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY,30(3),283-288. |
| MLA | Gueguen, Y,et al."PenBase, the shrimp antimicrobial peptide penaeidin database: Sequence-based classification and recommended nomenclature".DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY 30.3(2006):283-288. |
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来源：海洋研究所
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