Comparative transcriptome analysis of Rimicaris sp reveals novel molecular features associated with survival in deep-sea hydrothermal vent
文献类型：期刊论文
| 作者 | Zhang, Jian1,2,4; Sun, Qing-lei1,2 ; Luan, Zhen-dong2,3,4; Lian, Chao3; Sun, Li1,2
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| 刊名 | SCIENTIFIC REPORTS
 |
| 出版日期 | 2017-05-17 |
| 卷号 | 7 |
| DOI | 10.1038/s41598-017-02073-9 |
| 文献子类 | Article |
| 英文摘要 | Shrimp of the family Alvinocarididae are the predominant megafauna of deep-sea hydrothermal vents. However, genome information on this family is currently unavailable. In the present study, by employing Illumina sequencing, we performed the first de novo transcriptome analysis of the gills of the shrimp Rimicaris sp. from the hydrothermal vent in Desmos, Manus Basin. The analysis was conducted in a comparative manner with the shrimp taken directly from the vent (GR samples) and the shrimp that had been maintained for ten days under normal laboratory condition (mGR samples). Among the 128,938 unigenes identified, a large number of differentially expressed genes (DEGs) between the GR and mGR samples were detected, including 2365 and 1607 genes significantly upregulated and downregulated, respectively, in GR. The DEGs covered diverse functional categories. Most of the DEGs associated with immunity were downregulated in GR, while most of the DEGs associated with sulfur metabolism and detoxification were upregulated in GR. These results provide the first comprehensive transcriptomic resource for hydrothermal vent Rimicaris and revealed varied categories of genes likely involved in deep-sea survival. |
| 语种 | 英语 |
| WOS记录号 | WOS:000401511100007 |
| 版本 | 出版稿 |
| 源URL | [http://ir.qdio.ac.cn/handle/337002/136862]  |
| 专题 | 海洋研究所_实验海洋生物学重点实验室 |
| 作者单位 | 1.Chinese Acad Sci, Inst Oceanol, Key Lab Expt Marine Biol, Qingdao 266071, Peoples R China 2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao, Peoples R China 3.Chinese Acad Sci, Inst Oceanol, Key Lab Marine Geol & Environm, Qingdao 266071, Peoples R China 4.Chinese Acad Sci, Inst Oceanol, Deep Sea Res Ctr, Qingdao 266071, Peoples R China |
| 推荐引用方式 GB/T 7714 | Zhang, Jian,Sun, Qing-lei,Luan, Zhen-dong,et al. Comparative transcriptome analysis of Rimicaris sp reveals novel molecular features associated with survival in deep-sea hydrothermal vent[J]. SCIENTIFIC REPORTS,2017,7. |
| APA | Zhang, Jian,Sun, Qing-lei,Luan, Zhen-dong,Lian, Chao,&Sun, Li.(2017).Comparative transcriptome analysis of Rimicaris sp reveals novel molecular features associated with survival in deep-sea hydrothermal vent.SCIENTIFIC REPORTS,7. |
| MLA | Zhang, Jian,et al."Comparative transcriptome analysis of Rimicaris sp reveals novel molecular features associated with survival in deep-sea hydrothermal vent".SCIENTIFIC REPORTS 7(2017). |
入库方式： OAI收割
来源：海洋研究所
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