Circview: a visualization and exploration tool for circular rnas
文献类型：期刊论文
| 作者 | Feng, Jing3; Xiang, Yu1; Xia, Siyu2; Liu, Huan4; Wang, Jun2; Ozguc, Fatma Muge1; Lei, Lijun2; Kong, Ruoshan3; Diao, Lixia5; He, Chunjiang2,6 |
| 刊名 | Briefings in bioinformatics
 |
| 出版日期 | 2018-11-01 |
| 卷号 | 19期号:6页码:1310-1316 |
| ISSN号 | 1467-5463 |
| 关键词 | Circular rnas Circrnas Visualization Exploration |
| DOI | 10.1093/bib/bbx070 |
| 通讯作者 | He, chunjiang(che@whu.edu.cn) ; Han, leng(leng.han@uth.tmc.edu) |
| 英文摘要 | Circular rnas (circrnas) are novel rising stars of noncoding rnas, which are highly abundant and evolutionarily conserved across species. number of publications related to circrnas increased sharply in recent years, representing emerging focuses in the field. therefore, tools, pipelines and databases have been developed to identify and store circrnas. however, there is no existing tool to visualize and explore circrnas. therefore, we introduce circview, a user-friendly visualization tool for circrnas detected from existing tools. circview enables users to visualize circrnas and to quantify number of samples with detected circrnas. circview allows users to explore circrnas detected by unique or multiple tools. furthermore, circview allows users to view the regulatory elements, such as microrna response elements and rna-binding protein binding sites. circview is a unique tool to visualize and explore circrnas, which helps users to better understand potential functions of circrnas and design the functional experiments. |
| WOS关键词 | DATABASE ; BIOGENESIS ; LANDSCAPE ; EFFICIENT ; REVEALS |
| WOS研究方向 | Biochemistry & Molecular Biology ; Mathematical & Computational Biology |
| WOS类目 | Biochemical Research Methods ; Mathematical & Computational Biology |
| 语种 | 英语 |
| 出版者 | OXFORD UNIV PRESS |
| WOS记录号 | WOS:000456689400017 |
| URI标识 | http://www.irgrid.ac.cn/handle/1471x/2373203 |
| 专题 | 武汉病毒研究所 |
| 通讯作者 | He, Chunjiang; Han, Leng |
| 作者单位 | 1.Univ Texas Hlth Sci Ctr Houston, McGovern Med Sch, Dept Biochem & Mol Biol, Houston, TX 77030 USA 2.Wuhan Univ, Sch Basic Med Sci, Wuhan 430071, Hubei, Peoples R China 3.Wuhan Univ, Int Sch Software, Wuhan, Hubei, Peoples R China 4.Chinese Acad Sci, Wuhan Inst Virol, Beijing, Peoples R China 5.Univ Texas MD Anderson Canc Ctr, Dept Bioinformat & Computat Biol, Houston, TX 77030 USA 6.Wuhan Univ, Hubei Prov Key Lab Allergy & Immunol, Wuhan, Hubei, Peoples R China |
| 推荐引用方式 GB/T 7714 | Feng, Jing,Xiang, Yu,Xia, Siyu,et al. Circview: a visualization and exploration tool for circular rnas[J]. Briefings in bioinformatics,2018,19(6):1310-1316. |
| APA | Feng, Jing.,Xiang, Yu.,Xia, Siyu.,Liu, Huan.,Wang, Jun.,...&Han, Leng.(2018).Circview: a visualization and exploration tool for circular rnas.Briefings in bioinformatics,19(6),1310-1316. |
| MLA | Feng, Jing,et al."Circview: a visualization and exploration tool for circular rnas".Briefings in bioinformatics 19.6(2018):1310-1316. |
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来源：武汉病毒研究所
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