Phylogeny of the rosidae: a dense taxon sampling analysis
文献类型：期刊论文
| 作者 | Sun, Miao1,2,3,4; Naeem, Rehan5; Su, Jun-Xia6; Cao, Zhi-Yong1; Burleigh, J. Gordon3,7; Soltis, Pamela S.4,7; Soltis, Douglas E.3,4,7; Chen, Zhi-Duan1 |
| 刊名 | Journal of systematics and evolution
 |
| 出版日期 | 2016-07-01 |
| 卷号 | 54期号:4页码:363-391 |
| 关键词 | Phylogeny Rapid radiation Rosidae Supermatrix |
| ISSN号 | 1674-4918 |
| DOI | 10.1111/jse.12211 |
| 通讯作者 | Soltis, douglas e.(dsoltis@ufl.edu) ; Chen, zhi-duan(zhiduan@ibcas.ac.cn) |
| 英文摘要 | Rosidae, a clade of approximately 90 000 species of angiosperms, exhibits remarkable morphological diversity and extraordinary heterogeneity in habitats and life forms. resolving phylogenetic relationships within rosidae has been difficult, in large part due to nested radiations and the enormous size of the clade. current estimates of phylogeny contain areas of poor resolution and/or support, and there have been few attempts to synthesize the available data into a comprehensive view of rosidae phylogeny. we aim to improve understanding of the phylogeny of rosidae with a dense sampling scheme using both newly generated sequences and data from genbank of the chloroplast rbcl, atpb, and matk genes and the mitochondrial matr gene. we combined sequences from 9300 species, representing 2775 genera, 138 families, and 17 orders into a supermatrix. although 59.26% of the cells in the supermatrix have no data, our results generally agree with previous estimates of rosidae phylogeny and provide greater resolution and support in several areas of the topology. several noteworthy phylogenetic relationships are recovered, including some novel relationships. two families (euphorbiaceae and salvadoraceae) and 467 genera are recovered as non-monophyletic in our sampling, suggesting the need for future systematic studies of these groups. our study shows the value of a botanically informed bioinformatics approach and dense taxonomic sampling for resolving rosid relationships. the resulting tree provides a starting point for large-scale analyses of the evolutionary patterns within rosidae. |
| WOS关键词 | NUCLEAR RIBOSOMAL DNA ; EUPHORBIACEAE-SENSU-LATO ; NUCLEOTIDE-SEQUENCE DATA ; INTERNAL TRANSCRIBED SPACER ; CHLOROPLAST RBCL GENE ; MOLECULAR PHYLOGENETICS ; CHARACTER EVOLUTION ; HISTORICAL BIOGEOGRAPHY ; PLASTID GENES ; 3 GENOMES |
| WOS研究方向 | Plant Sciences |
| WOS类目 | Plant Sciences |
| 语种 | 英语 |
| WOS记录号 | WOS:000383771900007 |
| 出版者 | WILEY-BLACKWELL |
| URI标识 | http://www.irgrid.ac.cn/handle/1471x/2376158 |
| 专题 | 中国科学院大学 |
| 通讯作者 | Soltis, Douglas E.; Chen, Zhi-Duan |
| 作者单位 | 1.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China 2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 3.Univ Florida, Dept Biol, Gainesville, FL 32611 USA 4.Univ Florida, Florida Museum Nat Hist, Gainesville, FL 32611 USA 5.Kohat Univ Sci & Technol, Dept Biotechnol & Genet Engn, Kohat 26000, Pakistan 6.Shanxi Normal Univ, Coll Life Sci, Linfen 041004, Shanxi, Peoples R China 7.Univ Florida, Genet Inst, Gainesville, FL 32608 USA |
| 推荐引用方式 GB/T 7714 | Sun, Miao,Naeem, Rehan,Su, Jun-Xia,et al. Phylogeny of the rosidae: a dense taxon sampling analysis[J]. Journal of systematics and evolution,2016,54(4):363-391. |
| APA | Sun, Miao.,Naeem, Rehan.,Su, Jun-Xia.,Cao, Zhi-Yong.,Burleigh, J. Gordon.,...&Chen, Zhi-Duan.(2016).Phylogeny of the rosidae: a dense taxon sampling analysis.Journal of systematics and evolution,54(4),363-391. |
| MLA | Sun, Miao,et al."Phylogeny of the rosidae: a dense taxon sampling analysis".Journal of systematics and evolution 54.4(2016):363-391. |
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来源：中国科学院大学
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