The microsatellites and minisatellites in the genome of fenneropenaeus chinensis
文献类型：期刊论文
| 作者 | Gao, H; Kong, J |
| 刊名 | Dna sequence
 |
| 出版日期 | 2005-12-01 |
| 卷号 | 16期号:6页码:426-436 |
| 关键词 | Microsatellites Minisatellites F. chinensis Genome Repeat types Repeat classes |
| ISSN号 | 1042-5179 |
| DOI | 10.1080/10425170500354359 |
| 通讯作者 | Kong, j(kongjie@sina.com) |
| 英文摘要 | Through two-time sequencing randomly in fenneropenaeus chinensis , 2,597,000 bp cumulative length random genomic sequences about occupying 1.23% of the entire genome are obtained, in which the length of the first time sequencing is 8,84,000 bp, by cutting the genome dna with sau3ai enzyme, and the second is 1,713,000 bp by breaking the genome dna with the physical method, ultrasonic. using tandem repeat finder (trf) soft to analyze the sequences, 4588 tandem repeats are found, in which the number of microsatellites (1-6 bp) is 3888, and 700 for minisatellites (>= 7 bp). the cumulative length of repeats is 3,05,555 bp, accounting for 11.72% of total cumulative sequence length, in which the cumulative length of microsatellites is 2,32,979 bp, accounting for 8.97% of total sequence length, and greater than those of other organisms, such as human and mosquito, etc. the dinucleotide repeat type is dominant in which the dominant repeat class is at. the second abundant repeat type is trinucleotide, of which the dominant repeat class is aat. interestingly, of all of repeat types, the repeat numbers and repeat classes of primer number repeat types, such as pentanucleotide, heptanucleotide, elevennucleotide, etc. are less than those of repeat types beside them. the phenomena may involve the genesis and the evolution of microsatellites and minisatellites. |
| WOS关键词 | SIMPLE REPETITIVE DNA ; TANDEM REPEATS ; GENETIC DIVERSITY ; MISMATCH REPAIR ; SSR MARKERS ; SEQUENCES ; IDENTIFICATION ; RECOMBINATION ; DROSOPHILA ; ABUNDANCE |
| WOS研究方向 | Biotechnology & Applied Microbiology ; Genetics & Heredity |
| WOS类目 | Biotechnology & Applied Microbiology ; Genetics & Heredity |
| 语种 | 英语 |
| WOS记录号 | WOS:000233305400004 |
| 出版者 | INFORMA HEALTHCARE |
| URI标识 | http://www.irgrid.ac.cn/handle/1471x/2378017 |
| 专题 | 中国科学院大学 |
| 通讯作者 | Kong, J |
| 作者单位 | 1.Chinese Acad Fishery Sci, Yellow Sea Fisheries Res Inst, Minist Agr, Key Lab Sustainable Utilizat Marine Fisheries Res, Qingdao 266071, Peoples R China 2.Chinese Acad Sci, Inst Oceanol, Qingdao 266071, Peoples R China 3.Chinese Acad Sci, Grad Sch, Beijing 100039, Peoples R China |
| 推荐引用方式 GB/T 7714 | Gao, H,Kong, J. The microsatellites and minisatellites in the genome of fenneropenaeus chinensis[J]. Dna sequence,2005,16(6):426-436. |
| APA | Gao, H,&Kong, J.(2005).The microsatellites and minisatellites in the genome of fenneropenaeus chinensis.Dna sequence,16(6),426-436. |
| MLA | Gao, H,et al."The microsatellites and minisatellites in the genome of fenneropenaeus chinensis".Dna sequence 16.6(2005):426-436. |
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来源：中国科学院大学
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