A transcriptomic analysis of superhybrid rice lyp9 and its parents
文献类型：期刊论文
| 作者 | Wei, Gang2,3,4; Tao, Yong2,3,4; Liu, Guozhen5,6; Chen, Chen5; Luo, Renyuan4; Xia, Hongai2,3; Gan, Qiang2,3,4; Zeng, Haipan5; Lu, Zhike5; Han, Yuning5 |
| 刊名 | Proceedings of the national academy of sciences of the united states of america
 |
| 出版日期 | 2009-05-12 |
| 卷号 | 106期号:19页码:7695-7701 |
| 关键词 | Heterosis Hybrid rice Transcriptome Quantitative trait loci Differentially expressed genes |
| ISSN号 | 0027-8424 |
| DOI | 10.1073/pnas.0902340106 |
| 通讯作者 | Yuan, longping(lpyuan@public.cs.hn.cn) |
| 英文摘要 | By using a whole-genome oligonucleotide microarray, designed based on known and predicted indica rice genes, we investigated transcriptome profiles in developing leaves and panicles of superhybrid rice lyp9 and its parental cultivars 93-11 and pa64s. we detected 22,266 expressed genes out of 36,926 total genes set collectively from 7 tissues, including leaves at seedling and tillering stages, flag leaves at booting, heading, flowering, and filling stages, and panicles at filling stage. clustering results showed that the f1 hybrid's expression profiles resembled those of its parental lines more than that which lies between the 2 parental lines. out of the total gene set, 7,078 genes are shared by all sampled tissues and 3,926 genes (10.6% of the total gene set) are differentially expressed genes (dg). as we divided dg into those between the parents (dg(pp)) and between the hybrid and its parents (dg(hp)), the comparative results showed that genes in the categories of energy metabolism and transport are enriched in dg(hp) rather than in dg(pp). in addition, we correlated the concurrence of dg and yield-related quantitative trait loci, providing a potential group of heterosis-related genes. |
| WOS关键词 | GENE-EXPRESSION ; MICROARRAY ANALYSIS ; ALLELIC VARIATION ; ORYZA-SATIVA ; F-1 HYBRID ; MAIZE ; GENOME ; ARABIDOPSIS ; LINES ; IDENTIFICATION |
| WOS研究方向 | Science & Technology - Other Topics |
| WOS类目 | Multidisciplinary Sciences |
| 语种 | 英语 |
| WOS记录号 | WOS:000266208900006 |
| 出版者 | NATL ACAD SCIENCES |
| URI标识 | http://www.irgrid.ac.cn/handle/1471x/2393944 |
| 专题 | 中国科学院大学 |
| 通讯作者 | Yuan, Longping |
| 作者单位 | 1.Natl Hybrid Rice Res & Dev Ctr, Changsha 410125, Hunan, Peoples R China 2.Chinese Acad Sci, Inst Genet & Dev Biol, State Key Lab Plant Genom, Beijing 100101, Peoples R China 3.Chinese Acad Sci, Inst Genet & Dev Biol, Natl Ctr Plant Gene Res, Beijing 100101, Peoples R China 4.Chinese Acad Sci, Grad Sch, Beijing 100039, Peoples R China 5.Chinese Acad Sci, Beijing Inst Genom, Key Lab Genome Sci & Informat, Beijing 101300, Peoples R China 6.Hebei Agr Univ, Coll Life Sci, Baoding 071001, Peoples R China |
| 推荐引用方式 GB/T 7714 | Wei, Gang,Tao, Yong,Liu, Guozhen,et al. A transcriptomic analysis of superhybrid rice lyp9 and its parents[J]. Proceedings of the national academy of sciences of the united states of america,2009,106(19):7695-7701. |
| APA | Wei, Gang.,Tao, Yong.,Liu, Guozhen.,Chen, Chen.,Luo, Renyuan.,...&Zhu, Lihuang.(2009).A transcriptomic analysis of superhybrid rice lyp9 and its parents.Proceedings of the national academy of sciences of the united states of america,106(19),7695-7701. |
| MLA | Wei, Gang,et al."A transcriptomic analysis of superhybrid rice lyp9 and its parents".Proceedings of the national academy of sciences of the united states of america 106.19(2009):7695-7701. |
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来源：中国科学院大学
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