A platform to standardize, store, and visualize proteomics experimental data
文献类型：期刊论文
| 作者 | Zheng, Guangyong1,2,3; Li, Hong1,2,4; Wang, Chuan2; Sheng, Quanhu2,5; Fan, Haiwei1; Yang, Shaoyou1; Liu, Boshu1; Dai, Jianliang1,3; Zeng, Rong5; Xie, Lu1 |
| 刊名 | Acta biochimica et biophysica sinica
 |
| 出版日期 | 2009-04-01 |
| 卷号 | 41期号:4页码:273-279 |
| 关键词 | Integrated platform General proteomics standard Xml data file Proteomics experiment |
| ISSN号 | 1672-9145 |
| DOI | 10.1093/abbs/gmp010 |
| 通讯作者 | Xie, lu(xielu@scbit.org) |
| 英文摘要 | With the development of functional genomics research, large-scale proteomics studies are now widespread, presenting significant challenges for data storage, exchange, and analysis. here we present the integrated proteomics exploring database (iped) as a platform for managing proteomics experimental data (both process and result data). iped is based on the schema of the proteome experimental data repository (pedro), and complies with the general proteomics standard (gps) drafted by the proteomics standards committee of the human proteome organization. in our work, we developed three components for the iped platform: the iped client editor, iped server software, and iped web interface. the client editor collects experimental data and generates an extensible markup language (xml) data file compliant with pedro and gps; the server software parses the xml data file and loads information into a core database; and the web interface displays experimental results, to provide a convenient graphic representation of data. given software convenience and data abundance, iped is a powerful platform for data exchange and presents an important resource for the proteomics community. in its current release, iped is available at http://www.biosino.org/iped2. |
| WOS关键词 | SPECTROMETRY-BASED PROTEOMICS ; MASS-SPECTROMETRY ; EXPRESSION PROFILES ; MINIMUM INFORMATION ; TOOLS ; UPDATE |
| WOS研究方向 | Biochemistry & Molecular Biology ; Biophysics |
| WOS类目 | Biochemistry & Molecular Biology ; Biophysics |
| 语种 | 英语 |
| WOS记录号 | WOS:000265094300001 |
| 出版者 | OXFORD UNIV PRESS |
| URI标识 | http://www.irgrid.ac.cn/handle/1471x/2400027 |
| 专题 | 中国科学院大学 |
| 通讯作者 | Xie, Lu |
| 作者单位 | 1.Shanghai Ctr Bioinformat Technol, Shanghai 200235, Peoples R China 2.Chinese Acad Sci, Shanghai Inst Biol Sci, Key Lab Syst Biol, Bioinformat Ctr, Shanghai 200031, Peoples R China 3.Fudan Univ, Sch Life Sci, Shanghai 200433, Peoples R China 4.Chinese Acad Sci, Grad Sch, Beijing 100039, Peoples R China 5.Chinese Acad Sci, Shanghai Inst Biol Sci, Key Lab Syst Biol, Res Ctr Proteome Anal, Shanghai 200031, Peoples R China |
| 推荐引用方式 GB/T 7714 | Zheng, Guangyong,Li, Hong,Wang, Chuan,et al. A platform to standardize, store, and visualize proteomics experimental data[J]. Acta biochimica et biophysica sinica,2009,41(4):273-279. |
| APA | Zheng, Guangyong.,Li, Hong.,Wang, Chuan.,Sheng, Quanhu.,Fan, Haiwei.,...&Xie, Lu.(2009).A platform to standardize, store, and visualize proteomics experimental data.Acta biochimica et biophysica sinica,41(4),273-279. |
| MLA | Zheng, Guangyong,et al."A platform to standardize, store, and visualize proteomics experimental data".Acta biochimica et biophysica sinica 41.4(2009):273-279. |
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来源：中国科学院大学
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