Conserved mirna analysis in gossypium hirsutum through small rna sequencing
文献类型：期刊论文
| 作者 | Ruan, Meng-Bin2; Zhao, Ying-Tao1,3; Meng, Zhao-Hong2; Wang, Xiu-Jie1; Yang, Wei-Cai2 |
| 刊名 | Genomics
 |
| 出版日期 | 2009-10-01 |
| 卷号 | 94期号:4页码:263-268 |
| 关键词 | Gossypium hirsutum Mirna Identification Sequencing |
| ISSN号 | 0888-7543 |
| DOI | 10.1016/j.ygeno.2009.07.002 |
| 通讯作者 | Wang, xiu-jie(xjwang@genetics.ac.cn) |
| 英文摘要 | Several mirna family and their targets in cotton had been identified by computational methods based on the conserved characterization of mirnas. so far, there are no experiments to validate the existence of mirnas in cotton. in this study, to analyze the mirnas in cotton, a small rna library of sequences from 18 to 26 nt of gossypium hirsutum seedling has been built by high-throughput sequencing. in this library, 34 conserved mirna families were identified by homology search and the mirna* sequences of them were also found in the library. furthermore, potential targets of these conserved mirna families were predicted in cotton tc library. however, based on the mature mirnas and their mir* sequences, only 8 conserved mirna encoding loci (mir156, mir157a, mir157b, mir162, mir164, mir393, mir399, mir827) were identified from cotton est sequences. multiple encoding loci of some mirnas were identified by comparing the cloned mirna and mir* sequences. (c) 2009 elsevier inc. all rights reserved. |
| WOS关键词 | LATERAL ROOT DEVELOPMENT ; MESSENGER-RNA ; LEAF POLARITY ; CELL FATE ; MICRORNA ; PLANT ; ARABIDOPSIS ; IDENTIFICATION ; COTTON ; EVOLUTION |
| WOS研究方向 | Biotechnology & Applied Microbiology ; Genetics & Heredity |
| WOS类目 | Biotechnology & Applied Microbiology ; Genetics & Heredity |
| 语种 | 英语 |
| WOS记录号 | WOS:000273387100007 |
| 出版者 | ACADEMIC PRESS INC ELSEVIER SCIENCE |
| URI标识 | http://www.irgrid.ac.cn/handle/1471x/2401049 |
| 专题 | 中国科学院大学 |
| 通讯作者 | Wang, Xiu-Jie |
| 作者单位 | 1.Chinese Acad Sci, Inst Genet & Dev Biol, State Key Lab Plant Gen, Beijing 100101, Peoples R China 2.Chinese Acad Sci, Inst Genet & Dev Biol, Natl Ctr Plant Gene Res Beijing, Key Lab Mol & Dev Biol, Beijing 100080, Peoples R China 3.Chinese Acad Sci, Grad Sch, Beijing, Peoples R China |
| 推荐引用方式 GB/T 7714 | Ruan, Meng-Bin,Zhao, Ying-Tao,Meng, Zhao-Hong,et al. Conserved mirna analysis in gossypium hirsutum through small rna sequencing[J]. Genomics,2009,94(4):263-268. |
| APA | Ruan, Meng-Bin,Zhao, Ying-Tao,Meng, Zhao-Hong,Wang, Xiu-Jie,&Yang, Wei-Cai.(2009).Conserved mirna analysis in gossypium hirsutum through small rna sequencing.Genomics,94(4),263-268. |
| MLA | Ruan, Meng-Bin,et al."Conserved mirna analysis in gossypium hirsutum through small rna sequencing".Genomics 94.4(2009):263-268. |
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来源：中国科学院大学
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