Comparing the performance of biomimetic pattern recognition with w8 and svm on prediction of horizontal gene transfers in bacteria genomes
文献类型：期刊论文
| 作者 | Chen Yang; Wang Shoujue |
| 刊名 | Chinese journal of electronics
 |
| 出版日期 | 2010 |
| 卷号 | 19期号:1页码:86-90 |
| 关键词 | Biomimetic pattern recognition Horizontal gene transfer Hyper sausage neuron Psi(3)-neuron Principle of homology-continuity |
| ISSN号 | 1022-4653 |
| 通讯作者 | Chen yang(ychen2008@sinano.ac.cn) |
| 英文摘要 | With the accomplishment of sequencing genomes, lots of homologous genes had been found in different species. these homologous genes are called horizontal transfer genes, in which genetic material is transferred from the genome of one organism to another. prediction of the horizontal gene transfers (hgt) has important meaning for understanding the genome evolution and estimating the hereditary material between species. a novel approach based on biomimetic pattern recognition (bpr) was proposed to predict the horizontal gene transfers in bacterial genomes. the basis of bpr points to the principle of homology-continuity (phc) that the difference between two samples of the same class must be gradually changed. the aim of bpr is to find an optimal covering in the feature space, which rather than "division" in traditional pattern recognition, emphasizing the "similarity" among homologous group members. two neuron models called hyper sausage neuron (hsn) and psi(3)-neuron as covering units in bpr were used to construct the multi-weighted neural network. the performance of the approach was superior to that of gene scoring method of 8-nucleotide composition (w8) and one-class support vector machine (svm). |
| WOS关键词 | EVOLUTION ; DNA |
| WOS研究方向 | Engineering |
| WOS类目 | Engineering, Electrical & Electronic |
| 语种 | 英语 |
| WOS记录号 | WOS:000274712900018 |
| 出版者 | TECHNOLOGY EXCHANGE LIMITED HONG KONG |
| URI标识 | http://www.irgrid.ac.cn/handle/1471x/2428027 |
| 专题 | 半导体研究所 |
| 通讯作者 | Chen Yang |
| 作者单位 | Chinese Acad Sci, Inst Semicond, Lab Artificial Neural Networks, Beijing 100083, Peoples R China |
| 推荐引用方式 GB/T 7714 | Chen Yang,Wang Shoujue. Comparing the performance of biomimetic pattern recognition with w8 and svm on prediction of horizontal gene transfers in bacteria genomes[J]. Chinese journal of electronics,2010,19(1):86-90. |
| APA | Chen Yang,&Wang Shoujue.(2010).Comparing the performance of biomimetic pattern recognition with w8 and svm on prediction of horizontal gene transfers in bacteria genomes.Chinese journal of electronics,19(1),86-90. |
| MLA | Chen Yang,et al."Comparing the performance of biomimetic pattern recognition with w8 and svm on prediction of horizontal gene transfers in bacteria genomes".Chinese journal of electronics 19.1(2010):86-90. |
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来源：半导体研究所
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