A complete genome assembly of glaciecola mesophila sp nov sequenced by using bigis-4 sequencer system
文献类型：期刊论文
| 作者 | Yuan LiNa2; Ren LuFeng2; Li YunTao1; Han WeiJing1; Yu Yong3; Chu YaNan2; Liu GuiMing2; Yu Dan2; Teng MingJing2; Wang Liang2 |
| 刊名 | Science china-life sciences
 |
| 出版日期 | 2011-09-01 |
| 卷号 | 54期号:9页码:835-840 |
| 关键词 | Glaciecola mesophila sp nov. Bigis-4 sequencer system Marine environment adaptation |
| ISSN号 | 1674-7305 |
| DOI | 10.1007/s11427-011-4211-9 |
| 通讯作者 | Yu yude(yudeyu@semi.ac.cn) |
| 英文摘要 | Using a pyrosequencing-based custom-made sequencer bigis-4, we sequenced a gram-negative bacterium glaciecola mesophila sp. nov. (gmn) isolated from marine invertebrate specimens. we generated 152043 sequencing reads with a mean high-quality length of 406 bp, and assembled them using the bigis-4 post-processing module. no systematic low-quality data was detected beyond expected homopolymer-derived errors. the assembled gmn genome is 5144318 bp in length and harbors 4303 annotated genes. a large number of metabolic genes correspond to various nutrients from surface marine invertebrates. its abundant cold-tolerant and cellular signaling and related genes reveal a fundamental adaptation to low-temperature marine environment. |
| WOS关键词 | ALTEROMONAS-MACLEODII ; BACTERIUM ; SEAWATER ; GENES ; SEA |
| WOS研究方向 | Life Sciences & Biomedicine - Other Topics |
| WOS类目 | Biology |
| 语种 | 英语 |
| WOS记录号 | WOS:000295213400006 |
| 出版者 | SCIENCE PRESS |
| URI标识 | http://www.irgrid.ac.cn/handle/1471x/2428327 |
| 专题 | 半导体研究所 |
| 通讯作者 | Yu YuDe |
| 作者单位 | 1.Chinese Acad Sci, Inst Semicond, Beijing 100083, Peoples R China 2.Chinese Acad Sci, Beijing Inst Genom, Key Lab Genome Sci & Informat, Beijing 100029, Peoples R China 3.Polar Res Inst China, SOA Key Lab Polar Sci, Shanghai 200136, Peoples R China |
| 推荐引用方式 GB/T 7714 | Yuan LiNa,Ren LuFeng,Li YunTao,et al. A complete genome assembly of glaciecola mesophila sp nov sequenced by using bigis-4 sequencer system[J]. Science china-life sciences,2011,54(9):835-840. |
| APA | Yuan LiNa.,Ren LuFeng.,Li YunTao.,Han WeiJing.,Yu Yong.,...&Yu Jun.(2011).A complete genome assembly of glaciecola mesophila sp nov sequenced by using bigis-4 sequencer system.Science china-life sciences,54(9),835-840. |
| MLA | Yuan LiNa,et al."A complete genome assembly of glaciecola mesophila sp nov sequenced by using bigis-4 sequencer system".Science china-life sciences 54.9(2011):835-840. |
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来源：半导体研究所
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