Systems-level analysis of risk genes reveals the modular nature of schizophrenia
文献类型:期刊论文
作者 | Xiong-Jian Luo1,3; Jiewei Liu2,4; Bing Su2,3 |
刊名 | Schizophrenia Research
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出版日期 | 2018 |
期号 | *页码:9 |
关键词 | Schizophrenia Protein-protein Interaction Molecular Network Disease Module Spatio-temporal Expression Pattern |
DOI | 10.1016/j.schres.2018.05.015 |
英文摘要 | Schizophrenia (SCZ) is a complex mental disorder with high heritability. Genetic studies (especially recent ge-nome-wide association studies) have identified many risk genes for schizophrenia. However, the physical inter-actions among the proteins encoded byschizophreniariskgenes remain elusiveand itisnotknown whethertheidentifiedriskgenesconvergeoncommonmolecularnetworksorpathways.Herewesystematicallyinvestigatedthe network characteristics of schizophrenia risk genes using the high-confidence protein-protein interactions(PPI) from the human interactome. We found that schizophrenia risk genes encode a densely interconnectedPPI network (P = 4.15 × 10 −31 ). Compared with the background genes, the schizophrenia risk genes in the in-teractome have significantly higher degree (P = 5.39 × 10 −11 ), closeness centrality (P = 7.56 × 10 −11 ),betweeness centrality (P = 1.29 × 10 −11 ), clusteringcoefficient (P = 2.22 × 10 −2 ), and shorter average shortestpath length (P = 7.56 × 10 −11 ). Based on the densely interconnected PPI network, we identified 48 hub genesand 4 modules formed by highly interconnected schizophrenia genes. We showed that the proteins encodedbyschizophrenia hubgenes have significantlymoredirect physicalinteractions. Geneontology(GO)analysisre-vealed that cell adhesion, cell cycle, immune system response, and GABR-receptor complex categories wereenriched in the modules formed by highly interconnected schizophrenia risk genes. Our study reveals thatschizophreniariskgenesencodeadenselyinterconnectedmolecularnetworkanddemonstratesthemodularna-ture of schizophrenia. |
语种 | 英语 |
源URL | [http://159.226.149.26:8080/handle/152453/12297] ![]() |
专题 | 昆明动物研究所_神经系统疾病 |
通讯作者 | Xiong-Jian Luo |
作者单位 | 1.Key Laboratory of Animal Models and Human Disease Mechanisms of the Chinese Academy of Sciences and Yunnan Province, Kunming Institute of Zoology, Kunming, Yunnan, China 2.State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China 3.Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming 650223, China 4.Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, China |
推荐引用方式 GB/T 7714 | Xiong-Jian Luo,Jiewei Liu,Bing Su. Systems-level analysis of risk genes reveals the modular nature of schizophrenia[J]. Schizophrenia Research,2018(*):9. |
APA | Xiong-Jian Luo,Jiewei Liu,&Bing Su.(2018).Systems-level analysis of risk genes reveals the modular nature of schizophrenia.Schizophrenia Research(*),9. |
MLA | Xiong-Jian Luo,et al."Systems-level analysis of risk genes reveals the modular nature of schizophrenia".Schizophrenia Research .*(2018):9. |
入库方式: OAI收割
来源:昆明动物研究所
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