中国科学院机构知识库网格
Chinese Academy of Sciences Institutional Repositories Grid
The integrated landscape of causal genes and pathways in schizophrenia

文献类型:期刊论文

作者Yongxia Huo2; Xiong-Jian Luo1,2; Xiaoyan Li2; Chunjie Gu2; Changguo Ma2
刊名Translational Psychiatry
出版日期2018
期号8页码:67
DOI10.1038/s41398-018-0114-x
英文摘要

Genome-wide association studies (GWAS) have identified more than 100 loci that show robust association withschizophrenia risk. However, due to the complexity of linkage disequilibrium and gene regulatory, it is challenging topinpoint the causal genes at the risk loci and translate the genetic findings from GWAS into disease mechanism andclinical treatment. Here we systematically predicted the plausible candidate causal genes for schizophrenia atgenome-wide level. We utilized different approaches and strategies to predict causal genes for schizophrenia,including Sherlock, SMR, DAPPLE, Prix Fixe, NetWAS, and DEPICT. By integrating the results from different predictionapproaches, we identified six top candidates that represent promising causal genes for schizophrenia, includingCNTN4, GATAD2A, GPM6A, MMP16, PSMA4, and TCF4. Besides, we also identified 35 additional high-confidence causalgenes for schizophrenia. The identified causal genes showed distinct spatio-temporal expression patterns indeveloping and adult human brain. Cell-type-specific expression analysis indicated that the expression level of thepredicted causal genes was significantly higher in neurons compared with oligodendrocytes and microglia (P <0.05).We found that synaptic transmission-related genes were significantly enriched among the identified causal genes (P<0.05), providing further support for the dysregulation of synaptic transmission in schizophrenia. Finally, we showedthat the top six causal genes are dysregulated in schizophrenia cases compared with controls and knockdown of thesegenes impaired the proliferation of neuronal cells. Our study depicts the landscape of plausible schizophrenia causalgenes for the first time. Further genetic and functional validation of these genes will provide mechanistic insights intoschizophrenia pathogenesis and may facilitate to provide potential targets for future therapeutics and diagnostics.

语种英语
源URL[http://159.226.149.26:8080/handle/152453/12310]  
专题昆明动物研究所_神经系统疾病
通讯作者Xiong-Jian Luo
作者单位1.Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming, Yunnan 650223, China
2.Key Laboratory of Animal Models and Human Disease Mechanisms of the Chinese Academy of Sciences and Yunnan Province, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan 650223, China
推荐引用方式
GB/T 7714
Yongxia Huo,Xiong-Jian Luo,Xiaoyan Li,et al. The integrated landscape of causal genes and pathways in schizophrenia[J]. Translational Psychiatry,2018(8):67.
APA Yongxia Huo,Xiong-Jian Luo,Xiaoyan Li,Chunjie Gu,&Changguo Ma.(2018).The integrated landscape of causal genes and pathways in schizophrenia.Translational Psychiatry(8),67.
MLA Yongxia Huo,et al."The integrated landscape of causal genes and pathways in schizophrenia".Translational Psychiatry .8(2018):67.

入库方式: OAI收割

来源:昆明动物研究所

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