Chromosome-wide gene dosage rebalance may benefit tumor progression
文献类型:期刊论文
作者 | Qin Yang2; Xing Yang2,4; Dequan Liu5; Mei Yan5; Li Zou2; Honglei Zhang2; Xu Feng1,2; Haibo Xu2,4; Baowei Jiao2; Xiaosan Su3 |
刊名 | Molecular Genetics and Genomics |
出版日期 | 2018 |
卷号 | 293期号:4页码:895-906 |
关键词 | Turner Syndrome Chromosome-wide Gene Dosage Imbalance (Cdi) Expression Ratios Of x:Aa Chromosome-wide Gene Dosage Rebalance (Cdr) Xist Tcga |
DOI | 10.1007/s00438-018-1429-2 |
英文摘要 | The high-risk of tumor initiation in patients with Turner syndrome (TS) characterized by X chromosome monosomy inwomen has been well established and aneuploidy, defined as an abnormal number of chromosomes, is a common feature inhuman cancer. However, the underlying mechanisms of X chromosome aneuploidy promoting tumorigenesis remain obscure.We propose that chromosome-wide gene dosage imbalance (CDI) may serve as an important mechanism. Here, we assessthe relative expression ratios of X chromosome and autosomes (expression ratios of X:AA) between tumor samples andadjacent normal samples across 16 tumor types using expression datasets from The Cancer Genome Atlas (TCGA) project.Our results show that the expression ratios of X:AA in tumor samples are frequently rebalanced to a lower level compared tothose in adjacent normal samples, which is termed chromosome-wide gene dosage rebalance (CDR) thereafter. Gene ontology(GO) analysis of differentially expression genes from X chromosome reveals that downregulation of multicellularity-relatedgenes and upregulation of unicellularity-related genes in tumors form a distinctive feature and enrichment analysis shows thatdownregulated genes are enriched in tumor suppressor genes, which indicate that CDR benefits tumor progression. Furtherexperimental results prove that disturbance of X chromosome expression by knocking down of XIST in breast cancer cells,which functions in initiation phase of X chromosome inactivation (XCI), inhibits tumor progression. Our results demonstratethat the prevalent CDRs across tumor types serve as an important mechanism in promoting tumor progression, which par-tially explains the high risk of tumor in patients with TS and also provides a new cancer therapy from the CDR perspective. |
语种 | 英语 |
源URL | [http://159.226.149.26:8080/handle/152453/12389] |
专题 | 昆明动物研究所_发育的印迹调控与进化学 |
通讯作者 | Baowei Jiao |
作者单位 | 1.Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming 650050, Yunnan, China 2.State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, Yunnan, China 3.Biomedical Research Center, First Hospital of Kunming, Kunming 650011, Yunnan, China 4.University of the Chinese Academy of Sciences, Beijing 100049, China 5.Department of Breast Surgery, Third Affiliated Hospital, Kunming Medical University, Kunming 650118, Yunnan, China |
推荐引用方式 GB/T 7714 | Qin Yang,Xing Yang,Dequan Liu,et al. Chromosome-wide gene dosage rebalance may benefit tumor progression[J]. Molecular Genetics and Genomics,2018,293(4):895-906. |
APA | Qin Yang.,Xing Yang.,Dequan Liu.,Mei Yan.,Li Zou.,...&Xiaosan Su.(2018).Chromosome-wide gene dosage rebalance may benefit tumor progression.Molecular Genetics and Genomics,293(4),895-906. |
MLA | Qin Yang,et al."Chromosome-wide gene dosage rebalance may benefit tumor progression".Molecular Genetics and Genomics 293.4(2018):895-906. |
入库方式: OAI收割
来源:昆明动物研究所
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