Thiosulphate is extensively used to enhance mercury (Hg) phytoextraction due to its efficient in prompting plant Hg uptake. However, the mechanism by which thiosulphate promotes Hg uptake is poorly understood. We determined the concentrations of Hg and potassium (K), and their spatial distribution, in the tissues of Brassica juncea grown in Hg-contaminated soils treated by thiosulphate and compared this to a non-treated soil (control). The spatial distribution of Hg and K was characterized using micro-X ray fluorescence spectroscopy. The subcellular localization and speciation of Hg in the root of plant treated by thiosulphate were elucidated using Transmission electron microscope coupled energy-dispersive X-ray (TEM-EDX) spectroscopy. Thiosulphate increased significantly the Hg concentration in the roots (mainly in the epidermis and xylem) and shoots (mainly in the vascular bundles), while Hg was accumulated in the root (mainly in the epidermis) of the control plant. Thiosulphate promoted the movement of Hg from the epidermis to the xylem of roots, with subsequent loading into the stem via vascular bundles. Thiosulphate decreased the K concentration in plant tissues, relative to the control plant, and we propose this is due to leakage of electrolyte from roots via increased plasma membrane permeability as a consequence of physiological damage caused by the added thiosulphate. Mercury was distributed mainly at the extracellular space in the roots and was shown by TEM-EDX to be predominately amorphous nano-clusters of HgS. We conclude that thiosulphate-promoted Hg accumulation in the plant may happen through increased plasma membrane permeability, a changed pathway of Hg movement within plants, and extracellular co-transportation of Hg-S complexes in the roots. Our results may underpin the ongoing development of phytomanagement as an environmental strategy for Hg contaminated soils around the world.