Characterization of the whole transcriptome of whelk Rapana venosa by single-molecule mRNA sequencing
文献类型：期刊论文
| 作者 | Song, Hao1,2,4; Yang, Meijie1,2,3; Yu, Zhenglin1,2,3; Zhang, Tao1,2,4
|
| 刊名 | MARINE GENOMICS
 |
| 出版日期 | 2019-04-01 |
| 卷号 | 44页码:74-77 |
| 关键词 | Iso-Seq Transcriptome Gastropod Rapana venosa |
| ISSN号 | 1874-7787 |
| DOI | 10.1016/j.margen.2018.10.002 |
| 通讯作者 | Zhang, Tao(tzhang@qdio.ac.cn) |
| 英文摘要 | The veined rapa whelk (Rapana venosa) is an important commercial gastropod in China but is also an important invasive pest worldwide. Lack of genome information restricts investigation of this species. Here we report the first full-length transcriptome database derived from six different developmental stages of the whelk obtained using the PacBio Iso-Seq. As a result, 88,162 high-quality and full-length unigenes were obtained with average length of 2895 bp, among which 70,496 unigenes were successfully annotated, and 192,951 CDS regions, 1182 transcription factors, 284,387 microsatellite loci, and 27,222 lncRNAs were indentified. This study provides a valuable resource for characterizing the R. venosa transcriptome and for future analyses of gene expression profiles. |
| 资助项目 | National Natural Science Foundation of China[31572636] ; earmarked fund for Modern Agro-industry Technology Research System[CARS-49] ; industry leading talents project of Taishan scholars ; project of blue industry leading talent team of Yantai double hundred plan ; Primary Research & Development Plan of Shandong Province[2016ZDJS06A02] ; Creative Team Project of the Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology[LMEES-CTSP-2018-1] ; China Scholarship Council |
| WOS研究方向 | Genetics & Heredity ; Marine & Freshwater Biology |
| 语种 | 英语 |
| WOS记录号 | WOS:000462800700011 |
| 出版者 | ELSEVIER SCIENCE BV |
| 源URL | [http://ir.qdio.ac.cn/handle/337002/154947]  |
| 专题 | 海洋研究所_海洋生态与环境科学重点实验室 |
| 通讯作者 | Zhang, Tao |
| 作者单位 | 1.Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Shandong, Peoples R China 2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266071, Shandong, Peoples R China 3.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 4.Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Shandong, Peoples R China |
| 推荐引用方式 GB/T 7714 | Song, Hao,Yang, Meijie,Yu, Zhenglin,et al. Characterization of the whole transcriptome of whelk Rapana venosa by single-molecule mRNA sequencing[J]. MARINE GENOMICS,2019,44:74-77. |
| APA | Song, Hao,Yang, Meijie,Yu, Zhenglin,&Zhang, Tao.(2019).Characterization of the whole transcriptome of whelk Rapana venosa by single-molecule mRNA sequencing.MARINE GENOMICS,44,74-77. |
| MLA | Song, Hao,et al."Characterization of the whole transcriptome of whelk Rapana venosa by single-molecule mRNA sequencing".MARINE GENOMICS 44(2019):74-77. |
入库方式： OAI收割
来源：海洋研究所
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