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Brief Survey of Biological Network Alignment and a Variant with Incorporation of Functional Annotations

文献类型：期刊论文

作者Jing, Fang1; Zhang, Shao-Wu1; Zhang, Shihua2,3
刊名CURRENT BIOINFORMATICS
出版日期2019
卷号14期号:1页码:4-10
关键词Biological network network alignment gene ontology alignment graph optimization
ISSN号1574-8936
DOI10.2174/1574893612666171020103747
英文摘要Background: Biological network alignment has been widely studied in the context of protein-protein interaction (PPI) networks, metabolic networks and others in bioinformatics. The topological structure of networks and genomic sequence are generally used by existing methods for achieving this task. Objective and Method: Here we briefly survey the methods generally used for this task and introduce a variant with incorporation of functional annotations based on similarity in Gene Ontology (GO). Making full use of GO information is beneficial to provide insights into precise biological network alignment. Results and Conclusion: We analyze the effect of incorporation of GO information to network alignment. Finally, we make a brief summary and discuss future directions about this topic.
资助项目National Natural Science Foundation of China[61873202] ; National Natural Science Foundation of China[61621003] ; National Natural Science Foundation of China[61473232] ; National Natural Science Foundation of China[91430111]
WOS研究方向Biochemistry & Molecular Biology ; Mathematical & Computational Biology
语种英语
WOS记录号WOS:000458622200002
出版者BENTHAM SCIENCE PUBL LTD
源URL[http://ir.amss.ac.cn/handle/2S8OKBNM/32551]  
专题应用数学研究所
通讯作者Zhang, Shao-Wu; Zhang, Shihua
作者单位1.Northwestern Polytech Univ, Coll Automat, Minist Educ, Key Lab Informat Fus Technol, Xian 710072, Shaanxi, Peoples R China
2.Chinese Acad Sci, Acad Math & Syst Sci, RCSDS, CEMS,NCMIS, Beijing 100190, Peoples R China
3.Univ Chinese Acad Sci, Sch Math Sci, Beijing 100049, Peoples R China
推荐引用方式
GB/T 7714		 Jing, Fang,Zhang, Shao-Wu,Zhang, Shihua. Brief Survey of Biological Network Alignment and a Variant with Incorporation of Functional Annotations[J]. CURRENT BIOINFORMATICS,2019,14(1):4-10.
APA Jing, Fang,Zhang, Shao-Wu,&Zhang, Shihua.(2019).Brief Survey of Biological Network Alignment and a Variant with Incorporation of Functional Annotations.CURRENT BIOINFORMATICS,14(1),4-10.
MLA Jing, Fang,et al."Brief Survey of Biological Network Alignment and a Variant with Incorporation of Functional Annotations".CURRENT BIOINFORMATICS 14.1(2019):4-10.

入库方式： OAI收割

来源：数学与系统科学研究院

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