Characterization of ladybird Henosepilachna vigintioctopunctata transcriptomes across various life stages
文献类型:期刊论文
作者 | Zhang, Qi-Lin1,2; Wang, Feng1; Guo, Jun1; Deng, Xian-Yu1; Chen, Jun-Yuan (陈均远)2,3![]() |
刊名 | SCIENTIFIC DATA
![]() |
出版日期 | 2018-06-05 |
卷号 | 5页码:9 |
ISSN号 | 2052-4463 |
DOI | 10.1038/sdata.2018.93 |
英文摘要 | Henosepilachna vigintioctopunctata is a vegetable pest that has spread worldwide. It belongs to the Coccinellidae family, whose members exhibit remarkable diversity, both in terms of their diets and the colored spots that appear on the elytra in the adult stage. Transcriptomic data from H. vigintioctopunctata at different life stages would be useful for further investigating the genetic basis of this dietary diversity and the formation of the colored spots in ladybird beetles, as well as revealing the population dynamics of H. vigintioctopunctata, which could be useful in pest control. Here, we generated a comprehensive RNA-seq data set (a total of similar to 24 Gb of clean data) for H. vigintioctopunctata by sequencing samples collected at different life stages. We characterized the transcriptomes of each of the four life stages (egg, larva, pupa, adult) and generated a high- coverage pool by combining all the RNA- seq reads. Furthermore, we identified a catalog of simple sequence repeat (SSR) markers. This represents the first study to collect transcriptome data from all life stages of a ladybird beetle. |
WOS关键词 | De-novo Transcriptome ; Rna-seq ; Genome ; Annotation ; Beetles ; Adaptation ; Evolution ; Insights |
资助项目 | Nanjing University[201702B075] ; Natural Science Foundation of China[31760042] ; Natural Science Foundation of China[41272008] |
WOS研究方向 | Science & Technology - Other Topics |
语种 | 英语 |
WOS记录号 | WOS:000434132200001 |
出版者 | NATURE PUBLISHING GROUP |
资助机构 | Nanjing University ; Natural Science Foundation of China |
源URL | [http://ir.nigpas.ac.cn/handle/332004/18684] ![]() |
专题 | 中国科学院南京地质古生物研究所 南京地质古生物研究所_其他 |
通讯作者 | Chen, Jun-Yuan (陈均远); Lin, Lian-Bing |
作者单位 | 1.Kunming Univ Sci & Technol, Fac Life Sci & Technol, Kunming 650500, Yunnan, Peoples R China 2.Nanjing Univ, Sch Life Sci, State Key Lab Pharmaceut Biotechnol, Nanjing 210023, Jiangsu, Peoples R China 3.Chinese Acad Sci, Nanjing Inst Geol & Paleontol, LPS, Nanjing 210008, Jiangsu, Peoples R China |
推荐引用方式 GB/T 7714 | Zhang, Qi-Lin,Wang, Feng,Guo, Jun,et al. Characterization of ladybird Henosepilachna vigintioctopunctata transcriptomes across various life stages[J]. SCIENTIFIC DATA,2018,5:9. |
APA | Zhang, Qi-Lin,Wang, Feng,Guo, Jun,Deng, Xian-Yu,Chen, Jun-Yuan ,&Lin, Lian-Bing.(2018).Characterization of ladybird Henosepilachna vigintioctopunctata transcriptomes across various life stages.SCIENTIFIC DATA,5,9. |
MLA | Zhang, Qi-Lin,et al."Characterization of ladybird Henosepilachna vigintioctopunctata transcriptomes across various life stages".SCIENTIFIC DATA 5(2018):9. |
入库方式: OAI收割
来源:南京地质古生物研究所
其他版本
除非特别说明,本系统中所有内容都受版权保护,并保留所有权利。