中国科学院机构知识库网格
Chinese Academy of Sciences Institutional Repositories Grid
Characterization of ladybird Henosepilachna vigintioctopunctata transcriptomes across various life stages

文献类型:期刊论文

作者Zhang, Qi-Lin1,2; Wang, Feng1; Guo, Jun1; Deng, Xian-Yu1; Chen, Jun-Yuan (陈均远)2,3; Lin, Lian-Bing1
刊名SCIENTIFIC DATA
出版日期2018-06-05
卷号5页码:9
ISSN号2052-4463
DOI10.1038/sdata.2018.93
英文摘要

Henosepilachna vigintioctopunctata is a vegetable pest that has spread worldwide. It belongs to the Coccinellidae family, whose members exhibit remarkable diversity, both in terms of their diets and the colored spots that appear on the elytra in the adult stage. Transcriptomic data from H. vigintioctopunctata at different life stages would be useful for further investigating the genetic basis of this dietary diversity and the formation of the colored spots in ladybird beetles, as well as revealing the population dynamics of H. vigintioctopunctata, which could be useful in pest control. Here, we generated a comprehensive RNA-seq data set (a total of similar to 24 Gb of clean data) for H. vigintioctopunctata by sequencing samples collected at different life stages. We characterized the transcriptomes of each of the four life stages (egg, larva, pupa, adult) and generated a high- coverage pool by combining all the RNA- seq reads. Furthermore, we identified a catalog of simple sequence repeat (SSR) markers. This represents the first study to collect transcriptome data from all life stages of a ladybird beetle.

WOS关键词De-novo Transcriptome ; Rna-seq ; Genome ; Annotation ; Beetles ; Adaptation ; Evolution ; Insights
资助项目Nanjing University[201702B075] ; Natural Science Foundation of China[31760042] ; Natural Science Foundation of China[41272008]
WOS研究方向Science & Technology - Other Topics
语种英语
WOS记录号WOS:000434132200001
出版者NATURE PUBLISHING GROUP
资助机构Nanjing University ; Natural Science Foundation of China
源URL[http://ir.nigpas.ac.cn/handle/332004/18684]  
专题中国科学院南京地质古生物研究所
南京地质古生物研究所_其他
通讯作者Chen, Jun-Yuan (陈均远); Lin, Lian-Bing
作者单位1.Kunming Univ Sci & Technol, Fac Life Sci & Technol, Kunming 650500, Yunnan, Peoples R China
2.Nanjing Univ, Sch Life Sci, State Key Lab Pharmaceut Biotechnol, Nanjing 210023, Jiangsu, Peoples R China
3.Chinese Acad Sci, Nanjing Inst Geol & Paleontol, LPS, Nanjing 210008, Jiangsu, Peoples R China
推荐引用方式
GB/T 7714
Zhang, Qi-Lin,Wang, Feng,Guo, Jun,et al. Characterization of ladybird Henosepilachna vigintioctopunctata transcriptomes across various life stages[J]. SCIENTIFIC DATA,2018,5:9.
APA Zhang, Qi-Lin,Wang, Feng,Guo, Jun,Deng, Xian-Yu,Chen, Jun-Yuan ,&Lin, Lian-Bing.(2018).Characterization of ladybird Henosepilachna vigintioctopunctata transcriptomes across various life stages.SCIENTIFIC DATA,5,9.
MLA Zhang, Qi-Lin,et al."Characterization of ladybird Henosepilachna vigintioctopunctata transcriptomes across various life stages".SCIENTIFIC DATA 5(2018):9.

入库方式: OAI收割

来源:南京地质古生物研究所

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